barSeed - Barley Seed Development Database

Probe ABC08693

Source Contig ABC08693

barSeed

Links

Affymetrix Source Sequence (1370 bp)

>ABC08693 1370
GAAGAAGCTAAGAAGGCATATATGGCTGCTAGAGAGGAGTCAGACGACACCACCGAGGTT
GCTTCAGAGGAAAAAGTCTCGTGAGCACTGATTGACAAGGTTGATGCCATGCTTCAGAAA
TTAGAAAAGGAGATTGATGATGTGGATGCACAAATCGGAAACTGCTGGCAACTGCTTGAT
AGGCTACCAACGAATTGGAAAGGCCAAGATGAAGGAGCAATCATCAAGCCACCCGCTCAT
CAGGTGGTGGAATGCCTGCCTGGTGGCTTCTCATTCGCAGGAGTCGTCATATGTTCAAGT
TGTTAATGAGTTGATCCTGCAAGCCAATGAAGATTCAGACGACGAGGTTGCTCTGGAGGC
TTGTGACTCTGGTTTGCGTTTTGTTAACATGGTCAGTGTACTGCGATGCCCCCTGAAGGA
TTGCATGAGTTCTTGCCATACTTAATACAAACTTTAGTGTTGAACGTGGTCTGCACTGCC
GATGATGGAAATGGAATCACTTGCTGATGCTGAGCAAAATATGCCTCAGGCAGGTGATGT
CCGGAAGGAGCAGGAAGCTGCTGTATTGGTGCTAAAGCAGAGGGATGCATTGCTGCATTT
TATCCCCACCTTGCAGGCTTTAGGTCCACTCAACCAGCAGTAGAAGGTTTGGAGGGAGGG
TAACCTGAATGCACCGGACAATGCTAACAAGAAATCCGACCAGCTCACAATCTTCCAGTT
CCTAGAGAAGTCACCTTTGGTAGATGAAATGGAACTTGTTACTTTTGGTATTCCTGATGG
ATTTCCGCCGCAACCTGCTGACATTACGCGGAAGCTAGTTGGTCTCGTTGATTCCTATAA
TACGATGATGCCTTTACGGCAAAAGTACTTATACAAGAAGATACGTGGGGAACGTGGCAA
GGAGATGGCAGACCTCGAGAAGACCTTGACAAGGTGTGTTAACCGCATCGACGAGAAGAT
TGAGGGGATCAGGGAGGCAGGAGGATTTTGTCCTAATCGTCCGAAGCTATTTGACAGTGT
CCCGAAGCCCTTGAAGCAGCAGAAAGAAAAGGTCAAATCTGGAGTGAAGTGATCTTTGAG
GAATATTTCCACTGACATGCAAAAATGTGGGGAGGGAAATGAAAGCAGTAAAAGTACAGG
CGCTTGTGCATAGTGATGGATATAAGCAGTAAAAGTACAGGCGCTTGTGCATAGTGATAT
GGAAGAGGATATAAGCAGTAAAAGTACAGGCGCTTGTGCCTCGTTCCTCGTTTCTGTTTC
CCAGTTATTACAAACTTAATAGCATATACTGTACAATTCCTGTGACTAAAATAGATAGTT
TGTTTTGGCCCTCTATACATTGCTTCCTGTGCAACCGGCTGTAGTAGTAC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_16790.2	1178	0.0	315 - 1072	99	757 / 758	CUST_25595_PI390587928	ABC08693
MLOC_16789.1	2005	0.0	1175 - 1930	99	755 / 756	CUST_25595_PI390587928	ABC08693
AK360541	1614	0.0	894 - 1614	99	720 / 721	None	ABC08693
MLOC_80584.7	1334	0.0	3 - 522	100	520 / 520	None	ABC08693
MLOC_80584.1	839	0.0	295 - 814	100	520 / 520	None	ABC08693
MLOC_80584.4	949	0.0	263 - 782	100	520 / 520	None	ABC08693
MLOC_16789.2	528	0.0	31 - 528	100	498 / 498	None	ABC08693
MLOC_80584.5	788	0.0	235 - 763	98	520 / 529	CUST_10570_PI390587928	ABC08693
MLOC_80584.3	958	0.0	263 - 791	98	520 / 529	CUST_10570_PI390587928	ABC08693
MLOC_80584.6	690	0.0	124 - 651	98	519 / 528	CUST_10570_PI390587928	ABC08693
MLOC_80584.8	1333	0.0	1 - 521	98	512 / 521	CUST_10570_PI390587928	ABC08693
MLOC_80584.2	914	0.0	276 - 797	97	513 / 529	CUST_10570_PI390587928	ABC08693
MLOC_80584.9	586	9e-71	441 - 586	100	146 / 146	CUST_10570_PI390587928	ABC08693
MLOC_80584.10	409	2e-137	144 - 409	100	266 / 266	CUST_10570_PI390587928	ABC08693
MLOC_16790.1	1379	4e-119	1147 - 1379	100	233 / 233	None	ABC08693
AK250433.1	2875	1e-69	2128 - 2310	93	170 / 183	CUST_17159_PI390587928 CUST_17160_PI390587928	ABC08692 ABC08693 ABC14481