barSeed - Barley Seed Development Database

Probe CUST_17159_PI390587928

Source Contig U35_18591

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17159_PI390587928	Hv_44K_v2	CTGAGAGGAGGAAAAAACTGGAATTCCTTGAGATGCAGGAAGAACTTATCAAGGAGGAAG	1759	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.272	2.252	1.221	0.762	0.458	0.531
Raw	2971.997	4445.940	2131.757	1974.676	445.608	559.576

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3335.2	3006	2e-24	870 - 929	100	60 / 60	minus	ABC08692 ABC14481
MLOC	AK250433.1	2875	7e-23	1760 - 1819	98	59 / 60	plus	ABC08692 ABC08693 ABC14481
MLOC	MLOC_3525.2	2244	7e-23	1879 - 1938	98	59 / 60	plus	ABC08692
MLOC	MLOC_3525.3	1992	7e-23	1627 - 1686	98	59 / 60	plus	ABC08692
MLOC	MLOC_3525.1	2278	7e-23	1808 - 1867	98	59 / 60	plus	ABC08692
JLOC1	JLOC1_1997.1	2959	8e-25	1813 - 1872	100	60 / 60	plus
JLOC1	JLOC1_2118.2	2041	4e-23	1444 - 1503	98	59 / 60	plus
JLOC1	JLOC1_2118.1	2270	4e-23	1673 - 1732	98	59 / 60	plus
Harvest21	ABC11199	825	3e-25	731 - 790	100	60 / 60	plus
Harvest35	U35_18591	1854	3e-25	1760 - 1819	100	60 / 60	plus

Contig Sequence (1854 bp)

>U35_18591 1854 Hv_44K_v2
TCGATTTCTGTTGGCCTACTGAGTGCGAACTCCCGGCCCCTTTCCTCCCTTCCCCTCTGC
TCCCCAAGGACGCAGGCTCAGGTAGGTACTGTAGCACCGGCGGACGGCGGTCCGGAGCTG
CTCTTTGTCCGTGGAGATCACTTCAGGGCTCCATCTGAAAAGACATGACCTTGGCCTCCA
CATTGGGAAGGTGAGTAGCAACCAATCATGGCGTCAAGGGCAATCATTAGGAGAAGAAAG
TATCTCTTGGATCATGTTAACGCACCTATCCTCTCGTCTTCCTCCTCTTCATTCCTCCAT
GGAACATTTGGTTTTAAGCCTGAGCCAAGAATAGCACAACAATTTCTTGAGCAAAGCTTA
GGGGACTCGAAGTCTGAGAAGGAGAATGAGCAATATAGTGTCAATTTTACAAAGGGGGGT
CTGCTAGGTCCTGATAACGGGCTTCTGCGACGTCCAGCTCACGTGATTTCTCACTATGGT
TATGGAATTGGAAGGAATGAATTTACGTTGCCTTTGGGAGCTAGAGGTTTGTTGCAGTCA
GTTCGCAAAGCATCAACTGCAACTGCTGGGCAACCTAAATTGGATATTGAAGAACAGGGT
GATAATCAAAACCAGAATAAAAGGAAAAAAGAAGCATCCCCAGAAGAATGTGATCAGGCT
GTGGAAGGGCTAAGCACGGCAAAAGCTAAAGCCAAAGCTAAGCAGGTGCAAGATTCGCTA
AAGGCTGACCAGTCAATCGTAAAGAAGTTCTGGGCAAGGCTTCTGGGTATTGGTCCGGCT
CTTCGAGCTGTTGCTTCAATGAGCAGAGCTGATTGGGCTGCAAAACTGAAGCATGGGAAA
GATGAATTTATTTCCACACTGCAGCATTACTGGCTAGGAACAAAGCTACTCTGGGCAGAT
GTTAGGATTTCATCAAGATTGCTGGTGAAACTTGCTGGTGGAAAGAGCCTCTCAAGAAGA
GAGAGGCAGCAGCTCACCCGTACAACAGCAGATATCTTCAGGCTGGTACCTGTTGCTGTG
TTCATTGTTGTCCCATTCATGGAATTCCTACTACCGGTGTTTCTTAAGTTGTTTCCAAAT
ATGCTGCCATCCACTTTTCAAGACAAGATGAAAGAAGAGGAAGCATTGAAAAGGAAACTG
AAAGCAAGGATGGAGTATGCAAAGTTTCTGCAAGATACTGCAAAAGAAATGGCAAAGGAA
GTCCAAACATCACGTAGTGGAGAAACTAAACAGACTGCTGAAGATCTGGATGAATTTTTA
AACAAGGTTAGGAAAGGTGAACGTGTATCCAATGATGAAATCTTGAACTTCGCGAAGCTG
TTTAATGATGAACTGACTTTGGATAACATGAGCAGACCACGCTTGGTAAATATGTGCAAA
TATATGGGTATTCGGCCTTTTGGTACGGACCATTACTTGAGGTTCATGCTTCGCAAAAAA
CTGCGCGACATTAAGAATGATGATAAGGTGATTCAAGCTGAGGGGGTGGAGTCTCTTTCT
GAAGAGGAGCTCCGGCAAGCCTGCCGTGAACGCGGCCACCTAGGCCTGCTGTCAACAGAA
GAAATGCGTCAACAGCTACGAGACTGGTTGGACCTCTCACTCAATCATGCTATGCCATCA
TCCCTTCTCATACTTTCAAGAGCTTTTATTGTATCTGGGAGAATGAAACCTGAGGAGGCT
GTTGTAGCAACATTGTCTTCTCTACCAGATGAAGTTGTGGATACAATTGGTACAGTATTG
CCATCTGAAGATTCAGTTTCTGAGAGGAGGAAAAAACTGGAATTCCTTGAGATGCAGGAA
GAACTTATCAAGGAGGAAGAGAAGAAGAAAGAGAAAGAAGAAAAGGCAAAACAA

Homology of Contig U35_18591 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g39550.3	743	protein\|calcium-binding mitochondrial protein anon-60Da, putative, expressed
Brachypodium v1_2	Bradi3g48350.3	766
Arabidopsis v10	AT3G59820.2	760	LETM1-like protein \| chr3:22098289-22101759 REVERSE LENGTH=760