- Probe CUST_10570_PI390587928
- Source Contig U35_45601
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10570_PI390587928 | Hv_44K_v2 | TTGATAGTTTCCACAGGCTACCAACGAATTGGAAAGGCCAAGATGAAGGAGCAATCATCA | 219 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.825 | 1.460 | 1.672 | 1.382 | 0.686 | 0.430 |
| Raw | 12.336 | 30.953 | 34.112 | 43.220 | 7.108 | 4.561 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_80584.8 | 1333 | 2e-24 | 71 - 130 | 100 | 60 / 60 | plus | ABC08693 |
| MLOC | MLOC_80584.10 | 409 | 2e-24 | 69 - 128 | 100 | 60 / 60 | plus | ABC08693 |
| MLOC | MLOC_80584.9 | 586 | 2e-24 | 70 - 129 | 100 | 60 / 60 | plus | ABC08693 |
| MLOC | MLOC_80584.5 | 788 | 2e-24 | 313 - 372 | 100 | 60 / 60 | plus | ABC08693 |
| MLOC | MLOC_80584.6 | 690 | 2e-24 | 202 - 261 | 100 | 60 / 60 | plus | ABC08693 |
| MLOC | MLOC_80584.3 | 958 | 2e-24 | 341 - 400 | 100 | 60 / 60 | plus | ABC08693 |
| MLOC | MLOC_80584.2 | 914 | 2e-24 | 354 - 413 | 100 | 60 / 60 | plus | ABC08693 |
| JLOC1 | JLOC1_53660.2 | 666 | 8e-25 | 145 - 204 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC44682 | 616 | 3e-25 | 220 - 279 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45601 | 616 | 3e-25 | 220 - 279 | 100 | 60 / 60 | plus |
Contig Sequence (616 bp)
>U35_45601 616 Hv_44K_v2 AACTATATAACTCCATGCTTGAAAGATAATACACAGAGGGGGCAGAAGAAGCTAAGAAGG CATATATGGCTGCTAGAGAGGAGTCAGACGACACCACCGAGGTTGCTTCAGAGGAAAAAG TCTCGTGAGCACTGATTGACAAGGTTGATGCCATGCTTCAGAAATTAGAAAAGGAGATTG ATGATGTGGATGCACAAATCGGAAACTGCTGGCAACTGCTTGATAGTTTCCACAGGCTAC CAACGAATTGGAAAGGCCAAGATGAAGGAGCAATCATCAAGCCACCCGCTCATCAGGTGG TGGAATGCCTGCCTGGTGGCTTCTCATTCGCAGGAGTCGTCATATGTTCAAGTTGTTAAT GAGTTGATCCTGCAAGCCAATGAAGATTCAGACGACGAGGTTGCTCTGGAGGCTTGTGAC TCTGGTTTGCGTTTTGTTAACATGGTCAGTGTACTGCGATGCCCCCTGAAGGATTGCATG AGTTCTTGCCATACTTAATACAAACTTTAGTGTTGAACGTGGTCTGCACTGCCGATGATG GAAATGGAATCACTTGCTGATGCTGAGCAAAATATGCCTCAGGCAGGTGATGTCCGGAAG GAGCANGAAGCTGCTG
Homology of Contig U35_45601 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |