barSeed - Barley Seed Development Database

Probe ABC08668

Source Contig ABC08668

barSeed

Links

Affymetrix Source Sequence (1020 bp)

>ABC08668 1020
GCTGAATGTTGCTGATATGAGACTATAATTAACTGAATTCTGCCGTCAAGTGATTCAGGA
ACAGGATGTCTCAGGGTCCAAATGCTAGACTTATTATACCTAGCAAGGTCCAAATGCTAG
ACTTATTATACCTGATAAGAGATGTTTGCATGTACTGTTGGCATGCCGTTCGATTCAACA
CAAGAAGCATAACAAAGTACTCAATATGCTGGAATAAATCTGGTTTGCATGAAGTTATTT
TAGGAACAACTGGGAGGAAACAAGGCACATCTTCAAAGGCAACATCCTTCCCCTCCACCG
AGTCATTGCTCTGCAAGTAAGAGAGTTCCCTTTCTCATTCCTAGCATTCTGAATTCCTGA
TGTAAGCCTGGCAAAATATCTGCGTTTTGATGGCAGGATAAGATTGGCAGTGGCCTTCAT
ATCACTTGAACATCCATTAGTCACAAAGTTCCATCATGAGAAGATTGCTTATCGTGCAAT
TAAGGGATTTTATCCTATACTGTATGGTTTTTAATTACTCAGATGGATAATGAGTTGAAG
GCACAGAGCTAGATTACATTAAATGATTTCCGATTCCTTGTGAGCAATGATTGTGAATAC
AATAAGTGAAGGTTTGAGATGTCTCATCTCTGTCGCAGGATATGGCTTGTGAGTACTAGC
AGATGCTTGAGCTTCTTAGAAAGGCCCCATTTTTTGGCAGATGGCGTGCTAAGCCAGGAT
CCGTTGATTCGTTTACAGTTCCACGGTGATGACTAGATCTTGAGGTTCTATGTTGTGTCG
TAGAGGCTGGTTCTTGAAGTTTCTTGGTTTCACCACAATTTTAGCAGTTTTGTGTATCAG
CTCTTTCAGCTTATTTGTAGCATGTGTGCTTCTGCACAATACTGAAGTTTTGAACAGTGA
TAGCCTGTAACAAACCTATAAAGCCCTATGATGTTTGGCACCATGAGGTGTTTATATGGA
TCGGTAACTCTGTAACTCTTATTATTTTAATTGTGTGTTAGAAAAGAAAAGTAGAAGGAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_30133.1	767	0.0	4 - 706	99	702 / 703	CUST_12284_PI390587928	ABC07976 ABC08667 ABC08668
MLOC_30133.2	687	4e-58	500 - 626	99	126 / 127	CUST_12284_PI390587928	ABC07976 ABC08667 ABC08668
AK375717	1774	8e-100	763 - 960	100	198 / 198	None	ABC05504 ABC08667 ABC08668
AK248142.1	2674	2e-91	1546 - 1743	97	193 / 198	CUST_12285_PI390587928 CUST_27520_PI390587928 CUST_4071_PI390587928	ABC05504 ABC07976 ABC08667 ABC08668
MLOC_30133.3	443	5e-57	263 - 383	100	121 / 121	None	ABC07976 ABC08667 ABC08668
MLOC_62357.1	331	4e-128	38 - 331	95	280 / 295	CUST_8884_PI390587928	ABC07976 ABC08667 ABC08668
MLOC_16299.6	2622	2e-125	103 - 391	95	274 / 289	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.9	1288	2e-91	605 - 802	97	193 / 198	CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.2	1554	2e-91	762 - 959	97	193 / 198	CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.4	2710	2e-125	138 - 426	95	274 / 289	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.1	1224	2e-91	762 - 959	97	193 / 198	CUST_12285_PI390587928	ABC08667 ABC08668
MLOC_16299.11	1634	2e-91	712 - 909	97	193 / 198	CUST_12285_PI390587928 CUST_4071_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_798.1	274	1e-123	1 - 274	96	263 / 274	None	ABC07976 ABC08667 ABC08668
MLOC_80740.1	267	8e-120	1 - 267	96	256 / 267	None	ABC07976 ABC08667 ABC08668
AK356234	1797	1e-108	1534 - 1789	95	242 / 256	CUST_16983_PI390587928 CUST_31172_PI390587928 CUST_8884_PI390587928	ABC07975 ABC07976 ABC08667 ABC08668
MLOC_41096.1	236	3e-99	4 - 236	95	221 / 233	None	ABC07976 ABC08667 ABC08668
MLOC_49848.1	634	2e-96	404 - 601	98	195 / 198	None	ABC08667 ABC08668
AK374941	3368	2e-91	2304 - 2501	97	193 / 198	CUST_27520_PI390587928 CUST_12285_PI390587928 CUST_4071_PI390587928	ABC05504 ABC07976 ABC08667 ABC08668
MLOC_41232.1	427	2e-91	209 - 427	95	207 / 219	None	ABC08667 ABC08668
MLOC_16299.13	1098	2e-91	629 - 826	97	193 / 198	CUST_12285_PI390587928	ABC08667 ABC08668
MLOC_16299.16	1066	2e-91	453 - 650	97	193 / 198	CUST_12285_PI390587928	ABC08667 ABC08668
MLOC_16299.8	1457	2e-91	535 - 732	97	193 / 198	CUST_12285_PI390587928 CUST_4071_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.5	2964	2e-91	570 - 767	97	193 / 198	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_26261.1	247	2e-90	1 - 218	94	206 / 218	CUST_8884_PI390587928	ABC07976 ABC08667 ABC08668
MLOC_16299.14	2555	2e-90	393 - 588	97	191 / 196	CUST_12285_PI390587928 CUST_4071_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_26991.5	1453	8e-90	625 - 822	97	192 / 198	None	ABC08667 ABC08668
MLOC_26991.4	1331	8e-90	628 - 825	97	192 / 198	None	ABC08667 ABC08668
MLOC_26991.1	1313	8e-90	637 - 834	97	192 / 198	None	ABC08667 ABC08668
MLOC_26991.6	1163	8e-90	503 - 700	97	192 / 198	None	ABC08667 ABC08668
MLOC_26991.2	1345	8e-90	637 - 834	97	192 / 198	None	ABC08667 ABC08668
MLOC_26991.3	1316	8e-90	637 - 834	97	192 / 198	None	ABC08667 ABC08668
MLOC_41694.1	457	4e-88	149 - 346	96	191 / 198	None	ABC08667 ABC08668
MLOC_31009.1	213	2e-86	4 - 210	95	196 / 207	None	ABC07976 ABC08667 ABC08668
MLOC_30319.1	203	6e-86	1 - 203	95	193 / 203	CUST_8884_PI390587928	ABC07976 ABC08667 ABC08668
MLOC_29321.1	208	1e-82	8 - 208	95	190 / 201	CUST_8884_PI390587928 CUST_31172_PI390587928	ABC08668
MLOC_81916.1	187	5e-82	1 - 187	96	180 / 187	None	ABC07976 ABC08667 ABC08668
MLOC_9262.1	238	1e-77	1 - 189	95	179 / 189	CUST_31172_PI390587928 CUST_8884_PI390587928	ABC08668
MLOC_16299.18	892	2e-75	1 - 178	96	170 / 178	CUST_4071_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_25233.1	1671	8e-75	1 - 199	93	186 / 201	CUST_8884_PI390587928	ABC08667 ABC08668
MLOC_30760.1	252	3e-74	2 - 165	98	160 / 164	None	ABC08667 ABC08668
MLOC_41954.1	229	4e-58	98 - 229	98	129 / 132	None	ABC08667 ABC08668
MLOC_79936.1	218	1e-52	4 - 132	96	124 / 129	None	ABC07976 ABC08668
AK373887	2449	2e-51	1080 - 1196	98	115 / 117	None	ABC08667 ABC08668