barSeed - Barley Seed Development Database

Probe ABC07975

Source Contig ABC07975

barSeed

Links

Affymetrix Source Sequence (1060 bp)

>ABC07975 1060
GTTCCTTCCCCTGTCGCCCCGATCGAAGCCGACGAGCTCAGCAGCCGCCGGAGCGGGGAC
GCCTCGCCGCCGTCTACCCTGGAAGGAAAAAAGATGGAGCCTGAAAGGAAGCCTCTGAGC
TTGCTGGAGCTATGTGTCCGGAGCGCCGTCGACAACCTCAGGTACATGAACAGCGTGGAC
AACTTGGAGATGGGCCTGCTCAAGAGAATCCTGCCCCACTGCACCTTGGAGCAGCTGACC
CACATCGAGAGCTGTACGCAGATGGACCTTACCGGCGTCACCGATGTGCTGTGGAAGAGG
TTCTTCCAGCGGGAATTCGGTGAGGCTGATATGAACGTTGCCATCAAGAGAATGAAGGAG
AGCGGAGTGCGTTACAAGTGGAAGAAACTCTTTGAGGCAAAAACAGAAAAGCAAAAGCAA
GTTGAACAAAGAATGTCTGCGGGACTCAGAAACAAATATGAAGCAGCAAATGCCGCGAAA
CAGAGCAAACAAATTAAAGTTTGTACGAAGATCCCACCGAACAGCAAAAGAAGTTTCTGG
GGAGGAAGTGGATCCAGCAGCCTATCCAACTCCAGCTACAAGAGCCCTATATTGAAGAAG
GCGAGGATGGAGGTTGACAGCCGGGCGAAAATGCAAGCTGCTATCCAAAGGAACACTGTT
GCAAGGTCATCACAGCCAGCAAGGCTGTCCTTTCCTAGCGACCAGACATCGAGGACGACG
ACAATTCATCGACCTAATTCAACCATAACCATCACCAAACCAACTGGTCCGAACAGGCCG
ATGCAAAAGCAGAACACCAGACCCAAATTTTAGAGGCCACTGCCATGGCATCATGCTTGC
GACTGCGGAGTTCGCCATGGTTGCGCGGAAACCTTCTTTCCTGTGGACAAGTCAACACCG
CTTGCCATTCAACAAGTCTTTGCGAGACAGGAAATAGTCTTGTTTGTAGTTGCCCCAGCT
GAGCACATGTACTCCTATCTTTAGGGGAGCAAACAATAACTGTCTGTACCAAACATTTTT
TTTAATATAAATATGATTCAATCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK249206.1	1065	0.0	23 - 1062	100	1040 / 1040	CUST_8886_PI390587928	ABC07975
MLOC_27541.1	732	0.0	1 - 656	98	645 / 656	CUST_8886_PI390587928	ABC07975
MLOC_25528.2	245	5e-102	28 - 244	98	212 / 217	None	ABC07975
AK356234	1797	4e-98	1100 - 1321	96	213 / 222	CUST_8884_PI390587928 CUST_16983_PI390587928 CUST_31172_PI390587928	ABC07975 ABC07976 ABC08667 ABC08668
MLOC_25528.4	244	1e-97	39 - 244	98	202 / 206	None	ABC07975
MLOC_43106.1	180	4e-83	1 - 177	98	174 / 177	None	ABC07975
MLOC_25528.3	294	5e-82	91 - 293	93	199 / 213	None	ABC07975
MLOC_25528.1	214	5e-67	36 - 214	92	174 / 189	None	ABC07975