barSeed - Barley Seed Development Database

Probe ABC08667

Source Contig ABC08667

barSeed

Links

Affymetrix Source Sequence (1504 bp)

>ABC08667 1504
TCGCCTGGGNACACTGTATATTCATGTCATTTTCATGCAGACCTTCATGATCCCAGGGAC
AATATTCATGTCATTGCTTGCTGGTGCCCTATTCGGGCAACTCCGGGGCGTGGCTCTGGT
TGTCTTTGCTGCCTCTGCTGCGAGCCTATCAGAATCGAACTGATTGTCATCCGGCTTATT
TGCGATGAGGCAACGCAAAAGAATCGCAACTCTTGAGAGACCAGAGGACGAACATGCGTT
GCTTTGTATCAGATCTGAACCACACAGCATGCCGGACGTAGGTCTGGAGCACGATGCATA
CCATGCGGAGGAAATAACGTCGGAGCAGCTAATCACAGAGTACAAGCTAAGTATGATACT
GAATGTTGCTGATATGAGACTATAATTAACTGAATTCTGCCGTCAAGTGATTCAGGAACA
GGATGTCTAAGGGTCCAAATGCTAGACTTATTATACCTAGCAGGGTCCAAATGCTAGACT
TATTATACCTGATAAGAGATGTTTGCATGTATTGTTGGCATGTCGTTTGATTCAACACAA
GAAGCATAACAAAGTAAATCATCTTTTTTCTTGCGGACAATAGCTGAATAAATCTGCTCT
AGTCTGTAGCAGGTCTAGCAGTACAGTTCATATTAGGTTCCAAAAATTTCCAACTCAGGG
AAGGAGCAGACATGAGCTCAAATTGTTAATGGCATGCAGGAACAATTTCAACAATGTCAT
CACCAGTACGATATTGCCGTTTTGTGGAGGAAAAAATCCTTGGCCTTTGTTTATAAGTTT
GTACAACACAGTTAATATGGTTTGTTGCCATTTTGAACTCCTTTGTATTTTGCTCTGACA
GTATCTTCATGCACCATTCTTTGGTTGAACTATTAAATAGAAGCTTAGCTTTGTCATTAA
TGTTTTATTAGGTACTCAATATGCCAGAATAAATCTGGTTTGCATGAAGTTCTTTTAGGA
ACAACTGGGAGGAAACAAGGCACATCTTTAAAGGCACCATCCTTACCCTCCACCGAGTCA
TTTGTCTGCAAGATAAGATTGGCAGAGGCCTTCATATCACTTGAACATCCATTAGTCACA
AAATTACGTCAAGAGAAGATTGATTATCGTGCAATTAAGGATATGGCTTGTGAGTACCAG
CAGATGCTTAAGCTTCTTAGAAAGGCTCCATTTTTAGGCAGATGGCGTGCTAAGCCAAGA
TCCGTTGATTCGTTTATAGTTCCATGGTGATGACCAGATCTTGAGGTTCTATGCTCCGTC
GCAGAGGCTGGTTCTTGAAGTTTCTTGATTTCACCCCAATTTTAGCAGTTTTGTGTACCA
ACTCTTTTAGCTTATTTGTAGCATGTGTGCTTCTTCACAATACTGATGTTTTGAACAGTG
GTAGCCTATAACAAACCTATAAAGCCCTATGATATTTGGCACCATGAGGTGTTTATATGG
ATCGGTAACTCTGTAACTCTTATTATTTTAATTGTTGGAGAGGAAAACAAAAAAAAAAAA
AAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK374941	3368	1e-64	1849 - 1989	99	139 / 141	CUST_12285_PI390587928 CUST_4071_PI390587928 CUST_27520_PI390587928	ABC05504 ABC07976 ABC08667 ABC08668
MLOC_16299.13	1098	0.0	1 - 1098	98	1095 / 1118	CUST_12285_PI390587928	ABC08667 ABC08668
MLOC_16299.2	1554	1e-114	3 - 230	99	227 / 228	CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.11	1634	1e-64	1224 - 1364	99	139 / 141	CUST_12285_PI390587928 CUST_4071_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.9	1288	5e-59	256 - 389	98	132 / 135	CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.16	1066	2e-117	1 - 237	99	235 / 237	CUST_12285_PI390587928	ABC08667 ABC08668
MLOC_16299.1	1224	1e-114	3 - 230	99	227 / 228	CUST_12285_PI390587928	ABC08667 ABC08668
AK248142.1	2674	5e-59	1979 - 2112	98	132 / 135	CUST_27520_PI390587928 CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC07976 ABC08667 ABC08668
MLOC_16299.8	1457	1e-64	1047 - 1187	99	139 / 141	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.10	2780	1e-64	2370 - 2510	99	139 / 141	CUST_12285_PI390587928 CUST_4071_PI390587928	ABC05504 ABC08667
AK375717	1774	6e-113	1218 - 1478	95	249 / 262	None	ABC05504 ABC08667 ABC08668
MLOC_16299.7	2530	2e-123	2095 - 2347	98	249 / 253	CUST_12285_PI390587928	ABC05504 ABC08667
MLOC_16299.5	2964	1e-64	2555 - 2695	99	139 / 141	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_41694.1	457	0.0	1 - 457	96	440 / 457	None	ABC08667 ABC08668
MLOC_49848.1	634	5e-64	1 - 146	97	142 / 146	None	ABC08667 ABC08668
MLOC_16299.6	2622	1e-64	2460 - 2600	99	139 / 141	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.3	1157	1e-64	748 - 888	99	139 / 141	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667
MLOC_16299.14	2555	1e-64	2376 - 2516	99	139 / 141	CUST_12285_PI390587928 CUST_4071_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.12	2586	1e-64	2176 - 2316	99	139 / 141	CUST_12285_PI390587928 CUST_4071_PI390587928	ABC05504 ABC08667
MLOC_16299.15	2483	1e-64	2073 - 2213	99	139 / 141	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667
AK373887	2449	1e-139	866 - 1196	94	311 / 331	None	ABC08667 ABC08668
MLOC_31531.1	296	2e-132	1 - 296	96	283 / 296	None	ABC08667
MLOC_48269.1	282	5e-128	1 - 282	96	271 / 282	None	ABC08667
MLOC_62357.1	331	9e-126	48 - 331	95	272 / 285	CUST_8884_PI390587928	ABC07976 ABC08667 ABC08668
MLOC_49390.1	277	2e-123	1 - 277	96	265 / 277	None	ABC08667
MLOC_798.1	274	2e-118	1 - 274	95	260 / 274	None	ABC07976 ABC08667 ABC08668
MLOC_30760.1	252	3e-115	2 - 251	97	242 / 250	None	ABC08667 ABC08668
MLOC_16299.4	2710	5e-59	301 - 434	98	132 / 135	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_30133.2	687	6e-113	418 - 687	94	254 / 270	CUST_12284_PI390587928	ABC07976 ABC08667 ABC08668
MLOC_16299.17	1021	1e-64	623 - 763	99	139 / 141	CUST_4071_PI390587928	ABC05504 ABC08667
AK356234	1797	1e-109	1534 - 1797	94	248 / 264	CUST_16983_PI390587928 CUST_8884_PI390587928 CUST_31172_PI390587928	ABC07975 ABC07976 ABC08667 ABC08668
MLOC_26991.5	1453	2e-78	1091 - 1289	93	186 / 199	None	ABC08667 ABC08668
MLOC_26991.4	1331	2e-78	1094 - 1292	93	186 / 199	None	ABC08667 ABC08668
MLOC_26991.1	1313	1e-109	613 - 849	97	231 / 238	None	ABC08667 ABC08668
MLOC_26991.6	1163	1e-109	479 - 715	97	231 / 238	None	ABC08667 ABC08668
MLOC_26991.2	1345	2e-78	1103 - 1301	93	186 / 199	None	ABC08667 ABC08668
MLOC_26991.3	1316	1e-109	613 - 849	97	231 / 238	None	ABC08667 ABC08668
MLOC_16299.18	892	6e-58	51 - 176	99	126 / 127	CUST_4071_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_80740.1	267	2e-97	1 - 230	95	218 / 230	None	ABC07976 ABC08667 ABC08668
MLOC_41096.1	236	9e-96	4 - 236	94	219 / 233	None	ABC07976 ABC08667 ABC08668
MLOC_26260.1	233	1e-94	1 - 231	94	218 / 232	None	ABC08667
MLOC_31009.1	213	6e-88	4 - 213	95	199 / 210	None	ABC07976 ABC08667 ABC08668
MLOC_26261.1	247	3e-85	1 - 208	94	196 / 208	CUST_8884_PI390587928	ABC07976 ABC08667 ABC08668
MLOC_30319.1	203	4e-84	1 - 203	95	192 / 203	CUST_8884_PI390587928	ABC07976 ABC08667 ABC08668
MLOC_41232.1	427	3e-80	89 - 304	92	200 / 217	None	ABC08667 ABC08668
MLOC_81916.1	187	2e-78	1 - 187	95	178 / 187	None	ABC07976 ABC08667 ABC08668
MLOC_41954.1	229	7e-77	1 - 223	90	206 / 229	None	ABC08667 ABC08668
MLOC_42260.1	175	3e-75	1 - 175	96	168 / 175	None	ABC08667
MLOC_30133.1	767	3e-75	581 - 767	94	177 / 188	CUST_12284_PI390587928	ABC07976 ABC08667 ABC08668
MLOC_30133.3	443	3e-75	260 - 443	95	174 / 184	None	ABC07976 ABC08667 ABC08668
MLOC_1896.1	192	8e-72	18 - 192	95	167 / 176	None	ABC08667
MLOC_25233.1	1671	1e-70	1 - 188	93	174 / 188	CUST_8884_PI390587928	ABC08667 ABC08668
MLOC_1364.2	1136	4e-65	1 - 166	94	156 / 166	None	ABC05504 ABC08667
MLOC_31516.1	150	3e-61	1 - 150	95	143 / 150	None	ABC08667
MLOC_1364.1	875	5e-54	212 - 351	94	132 / 140	None	ABC05504 ABC08667
MLOC_1364.3	898	5e-54	5 - 144	94	132 / 140	None	ABC05504 ABC08667