barSeed - Barley Seed Development Database

Probe ABC05504

Source Contig ABC05504

barSeed

Links

Affymetrix Source Sequence (1423 bp)

>ABC05504 1423
TTCCAATCCTTTTCCCTCTCTCTCTCTCTCTCTCTTCCCTCGTCCGCCATATAAACTTGT
CCGGGAAAGGCAGCCGGGGAGAGAGGAGAGAAAGGAAGGAAAGGGAGCCGAGGAAAGCTC
TCCCCCCCTCCCGAATTTCCATCGTTCTCCCTTCCGCTCCTCGCCTCGCCCGGACCCCGG
CCGGATTCCCGCAGGAGGAGAAGGAGGAGGAGGAGGAGGGGATGGGGAGGGAGGACCGGT
TCCCGCTCTGGGAGGCCGCGCTCGGCGCCGGGGTCGCCGCCGTCTTCGCCGCGGGCCTCG
TCGGGGTCTACCTCTCCATGCCGGACTCCGACTACAGCTTCCTCAAGTTGCCCCGCAACC
TCCACGAACTACAAATCCTCACTGGCCATCTTGAGAACTATACCAGTGACTACACCGTAC
AGGTGTTGATAGGTTACTGTGCTGTATACATATTCATGCAGACCTTCATGATCCCAGGGA
CAATATTCATGTCATTGCTTGCTGGTGCTCTATTCGGGCAACTCCGGGGCGTGGCTTTGG
TTGTCTTTGCTGCCTCCGCTGGTGCTTCTTCATGCTATTTCCTGTCGAAACTGATTGGAA
AACCGCTGGTGTTCGTGCTGTGGCCAGACAAACTCACGTTTTTCCAGAAGCAGGTTGCCA
AAAGAAGAGAAAAGCTGTTGAATTACATGCTTTTCCTGAGGGTCACCCCAACATTGCCAA
ATACCTTCATCAACTTAGCATCTCCCATTGTTGATGTGCCCTTCCATACCTTCTTATTGG
CAACTCTTATCGGTCTCATCCCAGCAGCCTACGTGACCGTGAGGGCTGGCATTGCTCTGG
GAGAGCTGACATCGCTCAGCGACCTGTACGACACCCAGTCAGTAGCTCTGCTGTTCTTGA
TCGGCGTCGTCTCGGTCACACCAGCATTGCTGAGCAAGGACGAGGCTCAAGAAAAGGCAC
CAGAAATCGCAGCAGGCGCCTCATGAACACCGAAGAGGAGCCACCTAGCCACCTGTACAT
ACCAAGGCACAGCATGTGGCGGCTTCATTGGATTTGGGCCTACAGGCCTTGTGAGGCGGA
TGACACATGGTTTGCTAGTTCACATGACAACACAGCACCACGGCGGGACCTTGGACCCTG
AGTCCGCCCATCACCCGCCTGCCGGAGATCTGCGTCGCCATGGGAACACTGTTTCATTTC
ATGGTCACCCCCCACATTGTTTGTTACGAATGAATCTGGGAAGCACAATGCCCATCCACA
GGCAAGTTGCTTCGGATGTGTAGACAAGTAGTGTGTGCGCCGTTCGTCAGCCTGCGATGC
TGTTTACTAGATGGAACTGGCAGCTAGTCAAAATCCTTGTATATATATTGACCAGATTCA
TTCAATCCATATTCAGTGATTCAATGACAATTTGTCTGCTGCT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK249899.1	1357	0.0	1 - 1346	99	1344 / 1346	CUST_27521_PI390587928 CUST_27520_PI390587928 CUST_27517_PI390587928	ABC05504
AK248142.1	2674	1e-79	1119 - 1307	95	180 / 189	CUST_27520_PI390587928 CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC07976 ABC08667 ABC08668
AK374941	3368	1e-79	1877 - 2065	95	180 / 189	CUST_12285_PI390587928 CUST_27520_PI390587928 CUST_4071_PI390587928	ABC05504 ABC07976 ABC08667 ABC08668
MLOC_60061.1	918	0.0	20 - 619	99	599 / 600	CUST_27517_PI390587928 CUST_27521_PI390587928	ABC05504
MLOC_1364.2	1136	2e-117	877 - 1136	96	250 / 260	None	ABC05504 ABC08667
MLOC_1364.1	875	6e-73	136 - 324	93	176 / 189	None	ABC05504 ABC08667
AK375717	1774	0.0	28 - 524	94	477 / 507	None	ABC05504 ABC08667 ABC08668
MLOC_40436.1	565	0.0	135 - 565	96	414 / 432	None	ABC05504
MLOC_1364.3	898	2e-141	605 - 898	98	287 / 294	None	ABC05504 ABC08667
MLOC_16299.10	2780	1e-79	2294 - 2482	95	180 / 189	CUST_12285_PI390587928 CUST_4071_PI390587928	ABC05504 ABC08667
MLOC_16299.15	2483	1e-79	1997 - 2185	95	180 / 189	CUST_12285_PI390587928 CUST_4071_PI390587928	ABC05504 ABC08667
MLOC_16299.8	1457	1e-79	971 - 1159	95	180 / 189	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.11	1634	1e-79	1148 - 1336	95	180 / 189	CUST_12285_PI390587928 CUST_4071_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.12	2586	1e-79	2100 - 2288	95	180 / 189	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667
MLOC_16299.18	892	1e-79	407 - 595	95	180 / 189	CUST_4071_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.3	1157	1e-79	672 - 860	95	180 / 189	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667
MLOC_16299.4	2710	1e-79	2225 - 2413	95	180 / 189	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.5	2964	1e-79	2479 - 2667	95	180 / 189	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.17	1021	1e-79	547 - 735	95	180 / 189	CUST_4071_PI390587928	ABC05504 ABC08667
MLOC_28050.1	714	5e-123	309 - 581	96	262 / 273	None	ABC05504
MLOC_1364.4	280	5e-123	1 - 270	96	260 / 270	None	ABC05504
MLOC_16299.2	1554	2e-121	1289 - 1554	96	259 / 269	CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_40436.4	224	3e-105	11 - 224	99	212 / 214	None	ABC05504
MLOC_40436.3	468	3e-105	252 - 468	99	214 / 217	None	ABC05504
MLOC_40436.2	1671	5e-83	1498 - 1671	99	172 / 174	None	ABC05504
MLOC_11473.1	360	9e-101	155 - 358	99	203 / 204	None	ABC05504
MLOC_27860.1	190	3e-95	1 - 190	100	190 / 190	None	ABC05504
MLOC_16299.7	2530	1e-94	2318 - 2529	96	207 / 215	CUST_12285_PI390587928	ABC05504 ABC08667
MLOC_16299.6	2622	1e-79	2384 - 2572	95	180 / 189	CUST_4071_PI390587928 CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_16299.14	2555	1e-79	2300 - 2488	95	180 / 189	CUST_12285_PI390587928 CUST_4071_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_8547.1	184	4e-69	3 - 166	95	162 / 170	None	ABC05504
MLOC_16299.9	1288	2e-67	1132 - 1288	96	154 / 160	CUST_12285_PI390587928	ABC05504 ABC08667 ABC08668
MLOC_42032.1	176	3e-65	41 - 176	100	136 / 136	None	ABC05504