barSeed - Barley Seed Development Database

Probe CUST_27521_PI390587928

Source Contig U35_16462

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27521_PI390587928	Hv_44K_v2	TGGAACTGGCAGCTAGTCAAAATCCTTGTATATATATTGACCAGATTCATTCAATCCATA	1331	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.292	1.887	1.352	0.862	0.401	0.472
Raw	387.924	916.563	548.074	558.722	89.403	115.916

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249899.1	1357	2e-24	1255 - 1314	100	60 / 60	plus	ABC05504
MLOC	MLOC_60061.1	918	2e-24	528 - 587	100	60 / 60	plus	ABC05504
JLOC1	JLOC1_39137.1	844	8e-25	527 - 586	100	60 / 60	plus
Harvest21	ABC51144	471	3e-25	364 - 423	100	60 / 60	plus
Harvest21	ABC05505	937	3e-25	844 - 903	100	60 / 60	plus
Harvest21	ABC05504	1423	3e-25	1332 - 1391	100	60 / 60	plus	ABC05504
Harvest35	U35_49433	471	3e-25	364 - 423	100	60 / 60	plus
Harvest35	U35_16464	416	3e-25	326 - 385	100	60 / 60	plus
Harvest35	U35_16462	1419	3e-25	1332 - 1391	100	60 / 60	plus

Contig Sequence (1419 bp)

>U35_16462 1419 Hv_44K_v2
TTCCAATCCTTTTCCCTCTCTCTCTCTCTCTCTCTTCCCTCGTCCGCCATATAAACTTGT
CCGGGAAAGGCAGCCGGGGAGAGAGGAGAGAAAGGAAGGAAAGGGAGCCGAGGAAAGCTC
TCCCCCCCTCCCGAATTTCCATCGTTCTCCCTTCCGCTCCTCGCCTCGCCCGGACCCCGG
CCGGATTCCCGCAGGAGGAGAAGGAGGAGGAGGAGGAGGGGATGGGGAGGGAGGACCGGT
TCCCGCTCTGGGAGGCCGCGCTCGGCGCCGGGGTCGCCGCCGTCTTCGCCGCGGGCCTCG
TCGGGGTCTACCTCTCCATGCCGGACTCCGACTACAGCTTCCTCAAGTTGCCCCGCAACC
TCCACGAACTACAAATCCTCACTGGCCATCTTGAGAACTATACCAGTGACTACACCGTAC
AGGTGTTGATAGGTTACTGTGCTGTATACATATTCATGCAGACCTTCATGATCCCAGGGA
CAATATTCATGTCATTGCTTGCTGGTGCTCTATTCGGGCAACTCCGGGGCGTGGCTTTGG
TTGTCTTTGCTGCCTCCGCTGGTGCTTCTTCATGCTATTTCCTGTCGAAACTGATTGGAA
AACCGCTGGTGTTCGTGCTGTGGCCAGACAAACTCACGTTTTTCCAGAAGCAGGTTGCCA
AAAGAAGAGAAAAGCTGTTGAATTACATGCTTTTCCTGAGGGTCACCCCAACATTGCCAA
ATACCTTCATCAACTTAGCATCTCCCATTGTTGATGTGCCCTTCCATACCTTCTTATTGG
CAACTCTTATCGGTCTCATCCCAGCAGCCTACGTGACCGTGAGGGCTGGCATTGCTCTGG
GAGAGCTGACATCGCTCAGCGACCTGTACGACACCCAGTCAGTAGCTCTGCTGTTCTTGA
TCGGCGTCGTCTCGGTCACACCAGCATTGCTGAGCAAGGACGAGGCTCAAGAAAAGGCAC
CAGAAATCGCAGCAGGCGCCTCATGAACACCGAAGAGGAGCCACCTAGCCACCTGTACAT
ACCAAGGCACAGCATGCGGCGGCTTCATTGGATTTGGGCCTACAGGCCTTGTGAGGCGGA
TGACACATGGTTTGCTAGTTCACATGACAACACAGCACCACGGCGGGACCTTGGACCCTG
AGTCCGCCCATCACCCGCCTGCCGGAGATCTGCGTCGCCATGGGAACACTGTTTCATTTC
ATGGTCACCCCCCACATTGTTTGTTACGAATGAATCTGGGAAGCACAATGCCCATCCACA
GGCAAGTTGCTTCGGATGTGTAGACAAGTAGTGTGTGCGCCGTTCGTCAGCCTGCGATGC
TGTTTACTAGATGGAACTGGCAGCTAGTCAAAATCCTTGTATATATATTGACCAGATTCA
TTCAATCCATATTCAGTGATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16462 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g50216.1	255	1e-146	protein\|SNARE associated Golgi protein, putative, expressed
Brachypodium v1_2	Bradi5g20030.1	255	1e-150
Arabidopsis v10	AT4G17790.1	264	9e-112	SNARE associated Golgi protein family \| chr4:9891425-9892675 FORWARD LENGTH=264