barSeed - Barley Seed Development Database

Probe ABC05595

Source Contig ABC05595

barSeed

Links

Affymetrix Source Sequence (2696 bp)

>ABC05595 2696
CCACGCCTGCATTTGGCACCCCGTCGTCCTCTCCGTTTGGGAGCTCCACGCCAGCTTTTG
GTTCATCGCCAGCCCCGGCGTTTGGCGCCACATCCTCTAACTTTGGTGGTGGATCTTTAT
TCGGACAAAAGCCAAGCTTTGGGGGTTTTGGATCATCTCCTAGCCAGTCTAGTCCATTTG
GTAGCACATTTCAGCAAACACAGCCAACATTTGGCAACAGCACTTTTGGCACCACAACTA
CGCCGGCCTTTGGTTCCACAACGACGGCAGCATTTGGCTCCACAACAGCTCCAGCATTTG
GCTCCACAACAACATCCTTATTTGGTGGTGCCTCCAGCACCCCAGCATTTGGTTCGACGC
CCTTTGGTTCGAACACAACTCCTGGTTTTGGATCTTCAGGTACTGGAGCATTTGGTGTGA
ATAGTGCTCCAGCTTTTGGAACTTCAACCACACCAGCAAGTGCTTTTAATTTTGGTTCTT
CACCGTCTTTTGGACAATCAGCAGCAGCAACTGGTAGCACCCTCTTTGGAACAAATTCAC
CCTTTGGAGCACAAACTTCTCCGTTCGGCTCGCAAACAGCTGCACCAGCATTCGGGCAAA
CTACGTTTGGAAGTCAATCTGGAGGAACCAGAATACAGCCTTATGTACAAACACCTGATG
CTGACACTGCTGCAAGTGGTTCTCAGCCTGCTGCAAAACTTGATTCCATATCAGCCATGC
CTGCATACAAAGAGAAGAGTCATGAAGAATTGAGGTGGGAAGATTACCAGCGTGGGGACA
AAGGTGGACCAAACTCTTCTGCAACTCCAGCAGCAGTGAACAACTTCTTATCTCAACAGC
CGAATTTTCAATCAAATCAACCAGCACCTGCGAATCCATTTACTAACCCTTCGGCCTCAC
CTTTTTCGAGTGCTTTTGGTACTACTCCGAACCCGTTTTCATCGTCTGCAACTACTACCT
CCTCGTTTGGACAAACAAGTGGGTCTACATTCCCAGCAAACACTTCATCTTCTCTATTTG
GAAATAATACCACTACTTCACTATTCAACAACCCAAATCCCTTCAATGCTGGGTCATCCA
TTAGTAATAGCACTCAATCATCTGGGCTGTTTACGTCTTCTCCTCTAATGGGGCAGCAGC
CATTTAGCCACTCATTTAACCAGCAATCAAGTACTCCAGCTTTCTCCACCAGTATGTTCA
ATACATCTAACATCGGAAGCACTGGAGGGATGTTTGGCAACACATCTTCACCTTTTCAGA
CACCATCATTTCAACAATCTACCCCTATTCAACCTACAAACTCGTTCTCATTCCAACCTC
AGACTCAACCAGCTTTGACAGGTGGATTCTCTGGTGTTTCCAACCTGATGAGTATGGCTC
CATTCGGACAGCAAACTACTAGCCAGTCCAATATGGTATTGCAGCCGACTCTTGTTTCAA
ATCCCTTTGGGACACTTCCATCAATGCCTCAGATGTCCATTGGGAATGGTGGATCCTCAC
CTTCTATCCAATATGGGATATCAAGTTTGCCGGTTGCTGAGAAGCCCCTTCCGAGCAGAA
CATTATCCATGGTGGTTCCTAGGCATTTATCACAGAGGAGGATAAAGCTGCTGCCACGAA
AATATAATGCAACATCTGATGGCAAGGTTCCATTCTTTGCTGATGATGAAGAATCCCCTG
TAACACCAAAAGCGGATGCCTTTTTCATCCCTAGAGAGAACCCAAGAAGTCTGATAATCC
GTCCAACAGACCAGTGGCCTTCACGTAGTACGGTTGGCCAACAATCAATTCCAAGGGATT
CAACTGATAATGGCAAACATAAAGATGCTTTTTTTGGGAGGGAGCACAATAAGGCTGCCA
TGACACCAACTCGGTCTGGTACAGTGGACAATGGCATCCACATTGATAACCATCGTGCAT
CAAGCGAGCCTGGGGCCGTGACACCGCCTGTGAATGGTGCTACCGTTGAGAAGATGGTGC
CTAAGCTCTCCCAGGCAGATTACTTCACGGAGCCCAGTCTAGAGGAGCTTGCTGCCAAAG
AACGTGCCGAGCCAGGCTACTGTAGTCAGGTTGTAGACTTCATTGTTGGGCGTGAAGGCT
ATGGCAGCATCAAATTCTTGGGAGAAACTGATGTGAGGGGCCTTGATCTGGAGTCAACTG
TGGAATTCAGTAACCGTGAAGTGATTGTGTACAAGGACGATAGCAAGAAGCCCCCAGTTG
GCGAGGGCCTGAACAAAGCTGCTTTGGTGACCCTCCTGAACATCAAGTGCATGAATAGGA
AGACGGACGAGCAGTACACGCAAGGTCCGAGGTTTGACAAGTTCAAGGAGATGCTGGTGA
AGAAGGCTGAGGAACAGGGAGTGGAGTTTATCTCGTTTGATGGCGCCAAGGGCGAGTGGA
AGTTCAGAGTGAAGCACTTCAGCTCCTACGGGTTTGGTGAAGCCGAAGCCGACCACCTGG
CTGATTCCTTGTAGCTTTATCGATAGGTGTTGTAATTGCTGCCTCTTTTGGATGATTGGT
GAACACTCGATTCTATGTAGCTTTGGTCGATGTAGCTGATCTGGTCTGGGAGAATATTGG
TTGTGATGCTTTTGTTCTCTGAATGCTGCTATGAGTTCCTTCCCATGTTTTTCTGTACAT
TCTTTTTTCATTGAAGAATGCACAAAAGTTACTTCTGGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK250437.1	3205	0.0	529 - 3205	99	2674 / 2677	CUST_17819_PI390587928 CUST_5379_PI390587928	ABC05592 ABC05595
MLOC_66182.1	2398	0.0	273 - 1665	100	1393 / 1393	CUST_5379_PI390587928 CUST_17819_PI390587928	ABC05595
MLOC_66182.2	2175	0.0	3 - 1386	99	1384 / 1393	CUST_5379_PI390587928 CUST_17819_PI390587928	ABC05595
MLOC_66182.3	2415	0.0	129 - 1460	100	1332 / 1332	CUST_5379_PI390587928 CUST_17819_PI390587928	ABC05595
MLOC_65275.1	3221	0.0	496 - 2916	83	2058 / 2472	CUST_13415_PI390587928 CUST_39707_PI390587928 CUST_543_PI390587928 CUST_13413_PI390587928	ABC05592 ABC05595
MLOC_65275.3	3149	0.0	467 - 2878	83	2051 / 2472	CUST_39707_PI390587928 CUST_13415_PI390587928 CUST_543_PI390587928	ABC05592 ABC05595
MLOC_25194.1	849	0.0	1 - 810	99	805 / 810	None	ABC05592 ABC05595
MLOC_65275.2	2291	6e-85	2051 - 2291	90	219 / 242	CUST_543_PI390587928 CUST_13415_PI390587928	ABC05595
MLOC_30972.1	468	0.0	1 - 468	98	459 / 468	None	ABC05595
MLOC_50502.1	336	1e-126	83 - 336	99	252 / 254	None	ABC05595