- Probe CUST_13415_PI390587928
- Source Contig U35_1613
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13415_PI390587928 | Hv_44K_v2 | CATTTGGAAATCAATCTGGAGGAACCAGAGTACAACCTTATGTGCTGACACCAGATCCTG | 171 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.163 | 1.336 | 1.343 | 0.770 | 0.446 | 0.517 |
| Raw | 65.576 | 51.065 | 55.060 | 42.761 | 10.219 | 12.776 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_65275.2 | 2291 | 2e-24 | 1087 - 1146 | 100 | 60 / 60 | plus | ABC05595 |
| MLOC | MLOC_65275.1 | 3221 | 2e-24 | 1105 - 1164 | 100 | 60 / 60 | plus | ABC05592 ABC05595 |
| MLOC | MLOC_65275.3 | 3149 | 2e-24 | 1076 - 1135 | 100 | 60 / 60 | plus | ABC05592 ABC05595 |
| JLOC1 | JLOC1_42947.3 | 3497 | 8e-25 | 1032 - 1091 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42947.2 | 3303 | 8e-25 | 1105 - 1164 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42947.1 | 3312 | 8e-25 | 1105 - 1164 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05593 | 515 | 3e-25 | 114 - 173 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1613 | 593 | 3e-25 | 172 - 231 | 100 | 60 / 60 | plus |
Contig Sequence (593 bp)
>U35_1613 593 Hv_44K_v2 TGCTCGAGCGGCCGCTGCCTGCCAATGCTTTTAGTTTTGGTTCTTCCCCATCCTTTGAAC AAACAGCATCTGCAACTGGAAGCACTCCGTTCGGAACAACTCCTTCGCCTTTTGGGGCAC AAACTTCTCCATTTGGCTCGCAGACAGCAGCACCAGCATTTGGGCAAGCTTCATTTGGAA ATCAATCTGGAGGAACCAGAGTACAACCTTATGTGCTGACACCAGATCCTGACAGTGCTA CAAGTGGTACTCAGCCTGCTGCAAAACTTAATTCCATATCAGCCATGCCTGCATACAAAG AGAAGAGTCATGAAGAGTTGAGGTGGGAAGATTACCAGCGTGGAGACAAAGGCGGACCAA ACTCTTCTGTAACTCCAGTGGCGAACAGCTTTCCAACTCCGGCGCCAAGTTTTCAAACAA ATCCGCCGGCAAATCCATTTGCTAAGCCCTCTACAGGTGGTTTTGGTGCCACTCCAAACC CATTTTCGTCGCCCACAGTTACCCCATTTGGACAAACAAGTAGTTCTGCATTTTCAGCAA ATACCTCACCATCTCTATTTGCGAATACTACTCCTTCATTATTCAGCACGCCA
Homology of Contig U35_1613 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g06890.1 | 937 | 1e-56 | protein|OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed |
| Brachypodium v1_2 | Bradi2g08980.1 | 799 | 3e-74 | |
| Arabidopsis v10 | None |