barSeed - Barley Seed Development Database

Probe CUST_39707_PI390587928

Source Contig U35_43722

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39707_PI390587928	Hv_44K_v2	ATTGATTGTCGTTTCTTGTCGGAAGTAGAGGTTTATTTATGCTTTTGAAATCTCTGTTCC	23	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.312	1.422	1.166	0.859	0.338	0.349
Raw	1676.313	2774.064	2036.157	2336.521	329.258	365.736

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65275.1	3221	2e-24	3125 - 3184	100	60 / 60	plus	ABC05592 ABC05595
MLOC	MLOC_65275.3	3149	2e-24	3087 - 3146	100	60 / 60	plus	ABC05592 ABC05595
JLOC1	JLOC1_42947.3	3497	8e-25	3310 - 3369	100	60 / 60	plus
JLOC1	JLOC1_42947.2	3303	8e-25	3116 - 3175	100	60 / 60	plus
JLOC1	JLOC1_42947.1	3312	8e-25	3125 - 3184	100	60 / 60	plus
Harvest21	ABC05592	950	3e-25	24 - 83	100	60 / 60	minus	ABC05592
Harvest35	U35_43722	559	3e-25	24 - 83	100	60 / 60	minus

Contig Sequence (559 bp)

>U35_43722 559 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTTTTTGGAACAGAGATTTCAAAAGCATAAATAAACCTCTACT
TCCGACAAGAAACGACAATCAATTCACTTATACAATCCACACACACACACACACATAGTA
CTAAACTAGCGCAAGGTTGCGCACTCCACAAACAAGAAAGATTTGTACAAAACATAGAAA
CGAAAGATAAGCCACATAGCATTATTCAAAAAACAAAAGCGTCACAATGAGAGTCCTCCG
AAATCAGTTACAACTTCCATGGACGGGGCTACATGGAATCGATCAGGCCTACTTCAGCTT
CAGCAAAACCATAGGAGCTGAAGTGCTTCACCTTGAACTTCCACTCGCCCTTAGCAGCGT
CAAACGAGATGAACTCCACACCCTGCTCCTCAGCCTTCTTCACCAGCATCTCCTTGTACT
TGTCCACCCTTGGACCCTCCGTGTATGGCTCGCTTGTCTTCCTGTTAACACACTTGATGT
TCAAAAGAGTCACCACAGCAGCTTTGTTCAGGCCCTCGCCAACCGGGGGCTTCTCGTTAT
CATCCTTGTACACAATCAC

Homology of Contig U35_43722 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None