barSeed - Barley Seed Development Database

Probe CUST_13413_PI390587928

Source Contig U35_1615

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13413_PI390587928	Hv_44K_v2	AAACCCAACCAGCTTCTACAGGTGGATTCACTGGTTTTTCCAACACTATGAATCTGGCTC	465	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.111	1.104	1.320	1.018	0.493	0.339
Raw	24.933	35.819	40.378	45.061	7.568	5.460

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65275.1	3221	2e-24	1801 - 1860	100	60 / 60	plus	ABC05592 ABC05595
JLOC1	JLOC1_42947.1	3312	8e-25	1801 - 1860	100	60 / 60	plus
Harvest21	ABC05594	1045	3e-25	466 - 525	100	60 / 60	plus
Harvest35	U35_1615	1045	3e-25	466 - 525	100	60 / 60	plus

Contig Sequence (1045 bp)

>U35_1615 1045 Hv_44K_v2
GCGCCAAGTTTTAAACAAATCCGCCGGCAAATCCATTTGCTAAGCCCTCTACAGGTGGTT
TTGGTGCCACTCCAAACCCATTTTCGTCGCCCACAGTTACCCCATTTGGACAAACAAGTA
GTTCTGCATTTTCAGCAAATACCTCACCATCTCTATTTGCGAATACTACTCCTTCATTAT
TCAGCACGCCATCGACAACCCCAAACCCTTTCAATAATAGCTTATCCATTAGTAATAATA
CTCAATCAGCTGGGCTGTTTCAGTCTTCCCCTGCAATAGCGCCATTTAGCCAGTCGTTTA
GCCAGCAATCAAGCACTCCAGCTTTCTCCAGTGGTATATTCAACACACCTAACATTGGAA
TGACTGGAGGGCTGTTTGGCAACACATCTTCCCCTTTTCTAACATCAACGTTTCAACAAT
CTGCCCCTGTTCAGCAGACTCCAAGCTTATTCTCATTCCAACCTCAAACCCAACCAGCTT
CTACAGGTGGATTCACTGGTTTTTCCAACACTATGAATCTGGCTCCATTTGGACAGCAAA
CCACCAGCCAGTCCAATATGGTTATGCAGCCGACTCTTGTTTCAAATCCCTTCGGGACAC
TTCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCCGCACCCTCCATCCAGTATG
GAATATCAAGTTTGCCGGTTGCTGAGAAGCCTCTTCCAAGCAGAACAGTATCCATGGTGG
TTCCTAGGCATTTGTCGCAGAGAAGGATAAAACTGCTGCCACGAAAATATAATCAGACAT
CTGATGGAAAGGTTCCTTTCTTTGCCGATGATGAAGAATGTCCTGCAACACCAAAAGCGG
ATGCCTTTTTCATCCCTAGAGAGAACCCGAGGAGTCTGATAATCCGTCCAACTGACCAGT
GGCGTTCACGTAGTGCGGTTGACAGGCAATCAGTACTGAGAGATTCAACTGATCTTGACA
AACATAACGGTGCTTTGGATGGGAAGGAGCGCGGCAAGGCTGCTGCGCCACCGACTCGAT
CTGGTTTGGTGGAAAATGGCACATA

Homology of Contig U35_1615 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g06890.1	937	6e-114	protein\|OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed
Brachypodium v1_2	Bradi2g08980.1	799	3e-137
Arabidopsis v10	AT1G59660.1	997	5e-53	Nucleoporin autopeptidase \| chr1:21924693-21929233 FORWARD LENGTH=997