barSeed - Barley Seed Development Database

Probe ABC05312

Source Contig ABC05312

barSeed

Links

Affymetrix Source Sequence (1319 bp)

>ABC05312 1319
CAAGTGCGAGCCAGCCACCAGTTCACCAGCAAGCTTGGGATTAACACACGTACCATCTCG
AGCAGCAAGCTAGCCCTCCACAGTCCACATGGCCAACGAAGAGGCGTTAATGTTCGCGCT
GCAGCTGGCTTCGTCGGCGGTCCTGCCTATGACGCTACGGACGTCCATCGAGCTGGGCCT
GCTCGAGACCCTGGTGGGCGCCGGTGGGAAGGTGCTGACCCCCGAGGAGGTGGCGGCGAA
GCTGCCGTCCAAAGCCGAGGCCAACCCGGACGCGGCGTCCATGGTGGATCGGCTGCTGCG
GGTGCTGGCAGCATACAAGGTCGTGTCGTGCGTGGTGGCCGAGTCCAGCGACGGCAGCCT
CTCACGCCGGTACGGCGCCGAGCCGGTGTGCAAGTGGCTCACCCCCAACGAGGAAGGCGT
CTCCATGGCCCCCTTCTGCCTCCTCGCCCAGGACAAGCTCTTCATGGAGGCCTGGTGCCA
CATGAAGGACGCGGTCCTTGAAGGTGGCAGTGCATTCACCAAGGCATTCGGGGCGTCCTG
GTTCGACTACGCCGGCACGGATGCGCGCTTCAACTCCGTCTTCAACGAGGCCATGAAGCA
ACATTCTGTGATCATCACCAAGAAGCTCCTCGAACTGTACACCGGTTTCGACGGCATCGG
CACCCTGGTGGATGTCGCCGGCGGCGTGGGTGCTGTCGTCCACACCATCACCAAGAAGTA
CCCGAGTATCAAGGGGATCAACTTCGACCTTCCCCATGTGATCTCAGATGCACAGCCTTG
CCCTGGCGTGGAGCACGTCGGCGGCGACATGTTCGAGAAGGTGCCCACCGGAGACGCCAT
CCTCATGAAGTGGATCCTCAACTGCTTCAGCGACGACGAGTGTGCCATCCTGCTCAAGAA
CTGCTACGACGCGCTGCCGGCGCATGGTAAGGTGATCAACGTGGAGTGTATCCTGCCGGT
GAACCCGGACGCCACAAACAGCGCGCAGGGGTTAATCAGCGTGGACGTGAGCCTGCTGGC
GTACAGCCCCGGCGGCAAGGAAAGGTACCTGAGGGACCTCGAGAAGCTCGCCAGGGCTGC
CGGGTTTACCGGCGTCAAGGCCACCTACATCTACGCCGACTTCTGGGCAATGGAGTACAC
CAAGTAGCGAGGTCACAGCTCGTATAGCATGCTGCTGTGTTCTTGCTACCAGCTCAATTT
CTAATAAATCTTAATCGACCGTAAGAGGGAGGGTTGGTGTGTTAACCCAATCGTTTCATT
TTGTATTTTGTGTTCGAATAAAAGGAAGCAAGGGCAACATGCGTGTCCTCCATCTTGAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_75528.1	1343	0.0	18 - 1336	99	1311 / 1319	CUST_17584_PI390587928 CUST_3875_PI390587928	ABC05311 ABC05312 ABC05313
MLOC_76018.2	1396	0.0	96 - 1155	89	941 / 1062	CUST_3878_PI390587928	ABC05311 ABC05312 ABC05313
AK373701	1394	0.0	141 - 1231	83	904 / 1091	None	ABC05312 ABC05313
MLOC_73307.1	1497	0.0	127 - 1194	81	868 / 1072	CUST_39721_PI390587928	ABC02528 ABC02539 ABC05311 ABC05312 ABC05313
MLOC_76018.1	1925	1e-134	274 - 663	89	348 / 391	CUST_3878_PI390587928	ABC05311 ABC05312 ABC05313
MLOC_15068.1	1185	0.0	4 - 1016	81	826 / 1026	None	ABC02532 ABC05312
AK359402	1362	0.0	112 - 1157	78	821 / 1055	CUST_1943_PI390587928 CUST_35657_PI390587928	ABC02528 ABC02532 ABC02535 ABC02539 ABC05312 ABC29740 ABC46271 ABC47157
MLOC_65378.2	1508	0.0	312 - 1357	78	821 / 1055	CUST_1943_PI390587928 CUST_35657_PI390587928	ABC02528 ABC02532 ABC02535 ABC02539 ABC05312 ABC46271 ABC47157
MLOC_65378.1	1661	0.0	312 - 1357	78	821 / 1055	CUST_35661_PI390587928 CUST_1943_PI390587928 CUST_35657_PI390587928	ABC02528 ABC02532 ABC02535 ABC02539 ABC05312 ABC29740 ABC46271 ABC47157