barSeed - Barley Seed Development Database

Probe ABC04589

Source Contig ABC04589

barSeed

Links

Affymetrix Source Sequence (2065 bp)

>ABC04589 2065
CTCCTCCACCCAGCCAGACCAGAGCAGAGGAGAGGAGAGCCTCCACCCCATCCAGGTCGG
TTTCGCCGCTTTGCTCCCGCTGACGGTTCCGTGAGAGCGAGGCGACCACCAACCAACAGC
GGAGTGGGCCGACGGAGCTTTGATGCGCCAGGCGCGGCCTCCCCCCGTCCTTTGATGGGC
AACGCATGCGGCGGTTCCCTTAGATCCAAGTACCTGCACAGCTTCAAGCACCCCGCCTCC
CAGCGCCACGACCCCGACCGCGACTACGACCCCAACCCCAACCCCAACCCCGCCGCCGCA
GCCGACTCCCCGAAGAAGACCAAGCCGGCCGCCAAGATGGACGGCCACGCGGCCCCCGCG
CAGCCCGCCGCGGCCATGAGGCGCGGCGGGGCGGGCGCCCCCGCCGACCTCGGCTCCGTC
CTCGGCCACCCCACGCCCAACCTGCGCGACCTCTACGCGCTCGGCCGGAAGCTCGGGCAG
GGCCAGTTCGGCACCACCTACCTCTGCACCGAGCTCGCCACGGGGGCCGACTACGCCTGC
AAGTCCATCTCCAAGCGCAAGCTCATCACAAAGGAGGACATCGACGACGTGCGACGCGAG
ATCCAGATCATGCACCACCTCTCCGGACACAAGAACGTCGTCGCCATCAAGGGCGCCTAC
GAGGACCAGCTCTACGTGCACATCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGAC
CGCATCATACAGCGGGGACACTACAGCGAGCGCAAGGCCGCCGAGCTCACCAGGATCATC
GTCGGGGTCGTCGAGGCCTGCCACTCGCTCGGGGTCATGCACCGGGACCTCAAGCCCGAG
AACTTCCTGCTCGCCAACAAGGACGACGACCTCTCGCTCAAGGCCATCGACTTCGGGCTC
TCCGTCTTCTTCAAGCCTGGCCAAATTTTCACCGATGTTGTTGGAAGCCCATATTATGTA
GCGCCAGAAGTGCTGTGCAAAAAATATGGACCAGAAGCTGATGTCTGGACCGCTGGTGTA
ATTCTCTACATTCTGCTAAGCGGTGTACCCCCATTTTGGGCAGAGACGCAGCAAGGAATA
TTTGATGCTGTACTGAAAGGTGTCATCGATTTTGATTCTGAACCCTGGCCTGTGATATCT
GACAGTGCAAAAGATCTGATAACAAGAATGCTCAATCCTCGCCCAGCTGAACGCTTGACA
GCACACGAAGTTCTATGCCATCCATGGATTCGTGATCATGGAGTTGCTCCTGATCGTCCT
CTTGACACAGCTGTCTTATCTCGCATCAAACAATTCTCTGCGATGAATAAGTTGAAGAAG
ATGGCTTTGCGGGTAATAGCTGAAAGCCTCTCAGAGGAGGAAATTGCAGGGCTGAAGGAA
ATGTTCCAGACTATGGATGCCGATAACAGTGGTGCAATTACATATGATGAGCTCAAAGAA
GGCTTGAGAAAATATGGCTCCACATTAAAGGATACTGAGATTCGTGATCTTATGGACGCG
GCGGATGTGGACAACAGTGGGACCATTGACTATATAGAGTTCATCGCTGCAACATTGCAT
CTGAATAAACTGGAGCGTGAGGAGCATCTGGTGGCAGCCTTTTCATATTTTGACAAAGAT
GGAAGTGGTTACATCACAGTGGATGAGCTGCAGCAAGCTTGCCTGGAGCATAACATGCCA
GATGCTTTTCTTGATGATGTCATTAAAGAAGCTGACCAGGACAATGATGGGCGCATTGAC
TATGGAGAATTTGTTGCCATGATGACCAAAGGCAACATGGGGGTCGGGCGAAGAACAATG
AGAAACAGCCTGAATATCAGCATGAGAGACGCACCTGGTGCAATCTAGACTTCCACGATG
TATATACAGCTTGTGGCTTTAGCTTCTTCCCGTCTTCCCGCTCCATCGAAGCCTTCCTGC
AAATTATCGAATCTTGTAAAATGCCTGTGTGGATGTGTGTTTCTGTGGATTCTGATTTAG
CTCGTCAATTGATTCGACGGAACGCATGCTAAGCTGGGTTGAAATGATCTCACACGTTGC
TGCTGCTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK362157	2145	0.0	120 - 2145	99	2024 / 2026	None	ABC04589 ABC27008
AK358395	1882	0.0	3 - 1851	99	1848 / 1849	CUST_4686_PI390587928	ABC04589 ABC27008
MLOC_71042.2	1540	0.0	1 - 1513	99	1510 / 1513	CUST_4686_PI390587928	ABC04589 ABC27008
MLOC_71042.1	1235	0.0	1 - 1233	99	1229 / 1233	None	ABC04589 ABC27008
MLOC_68114.1	1992	0.0	31 - 1439	87	1226 / 1409	CUST_4_PI390587928 CUST_36670_PI390587928	ABC04589 ABC16157
AK364859	2198	0.0	270 - 1753	86	1278 / 1487	CUST_4_PI390587928 CUST_36670_PI390587928	ABC04589 ABC16157
MLOC_68114.2	1788	0.0	9 - 1419	87	1226 / 1411	CUST_36670_PI390587928	ABC04589 ABC16157
MLOC_55774.3	3705	1e-160	1796 - 2979	76	909 / 1201	CUST_20719_PI390587928 CUST_31154_PI390587928	ABC04589 ABC06447 ABC16998
MLOC_55774.5	3232	7e-158	1463 - 2648	76	909 / 1203	CUST_20719_PI390587928 CUST_31154_PI390587928	ABC04589 ABC06447 ABC16998
MLOC_55774.4	3233	3e-156	1463 - 2649	75	909 / 1204	CUST_20719_PI390587928 CUST_31154_PI390587928	ABC04589 ABC06447 ABC16998
MLOC_6934.1	1952	2e-128	1373 - 1802	86	370 / 430	None	ABC04589 ABC11168
MLOC_38029.1	961	1e-125	58 - 782	78	578 / 738	None	ABC04589 ABC06447
MLOC_60082.1	259	3e-122	1 - 242	99	241 / 242	None	ABC04589
MLOC_76014.3	1309	1e-56	89 - 245	92	145 / 157	None	ABC04589 ABC27008
MLOC_76014.2	1743	4e-56	282 - 437	92	144 / 156	None	ABC04589 ABC27008
MLOC_76014.1	1512	1e-56	285 - 441	92	145 / 157	None	ABC04589 ABC27008
MLOC_47467.1	302	1e-65	145 - 302	96	151 / 158	None	ABC04589
MLOC_76003.1	2014	4e-61	349 - 726	78	298 / 381	None	ABC04589 ABC10231