barSeed - Barley Seed Development Database

Probe ABC06447

Source Contig ABC06447

barSeed

Links

Affymetrix Source Sequence (1794 bp)

>ABC06447 1794
GGGCAGGGGCAGTTCGGCACCACCTACCTGTGCGTGGCCAAGGAGGACGGCGGCGAGTTC
GCGTGCAAGTCCATCCCCAAGCGCAAGCTGCTGTGCCGCGAGGACTACGAGGACGTCTGG
CGCGAGATCCAGATCATGCACCACCTGGGGGAGCGCCCCAACGTCGTCCGCATCCGTGGC
GCCTACGAGGACGCGCTCTTCGTGCACATTGTCATGGAGCTCTGCGCGGGCGGTGAGCTC
TTCGACCGCATCGTGGCCAAGGGGCACTACACCGAGCGTGCCGCAGCGCAGCTCATCAGG
ACCATAGTTGGGGTCGTGGAGGCATGCCACTCGCTCGGCGTCATGCACCGGGACCTCAAG
CCGGAGAATTTCCTGTTTGCCAGCACTGCCGAGGACGCCCCGCTCAAGACCACCGATTTT
GGGCTATCCATGTTCTACAAGCCTGGTGACAAATTCTCTGATGTTGTTGGGAGCCCCTAC
TATGTTGCACCTGAAGTGCTTCAGAAATGCTATGGTCCAGAAGCTGATGTCTGGAGTGCT
GGGGTGATTCTGTACATTTTGCTATGTGGTGTCCCCCCTTTCTGGGCAGAAACTGAAGCA
GGAATCTTCAGACAGATCCTTCGAGGCAAACTTGATTTTGAGTCTGAGCCCTGGCCTAGT
ATCTCTGACAGCGCTAAAGATCTAGTCCGTACTATGCTTTGCAGGGATCCTACAAAGCGG
CTCTCTGCTCATGAGGTTCTCTGTCACCCATGGATTGTTGATGATGCTGTGGCGCCTGAT
AAGCCTATTGATTCTGCTGTTTTATCAAGGCTGAAGCATTTTTCTGCAATGAACAAGCTC
AAGAAGATGGCATTGAGGGTTATTGCTGAAAGCCTGTCTGAGGAAGAGATTGGAGGTCTA
AGGGAGCTGTTCAAAATGATTGATGCTGACAATAGTGGAACTATAACATTTGATGAGCTG
AAAGATGGCTTGAAAAGGGTGGGCTCAGAACTAACTGAACATGAAATCCAGGCTTTAATG
GATGCGGCGGACATCGACAACAGCGGAACGATTGATTATGGTGAATTCATCGCAGCTACA
TTGCACATGAACAAACTAGAGAGGGAGGAGAACTTGGTGTCAGCATTCTCGTTTTTTGAC
AAGGATGGAAGTGGATTCATCACCATCGATGAGCTATCACATGCATGCCGGGAATTTGGT
CTGGATGACGTTCACCTTGAGGATATGATCAAAGATGTCGATCAGAACAATGACGGGCAA
ATCGATTACAGTGAGTTCACAGCGATGATGAGGAAGGGCAATGCCGGCGCAACAGGGAGG
CGGACCATGAGGAACAGCTTGAATCTGAATCTCGGCGACATCTTGAATCCCAGCAACAGC
TAAGTTGGCATGGGGAGGAGAAATGCCATACCTGGTGGATGCCAGTTTGTGAAAGTTTTT
GCATGCCTGATCAGCTGGACTACTAATCTAAGAGGGGAAGGGAGATAGATGGAGTCTCCT
AGTAGTACTCAGTAGCTAGAGGGAGGAAATGGCGCACTCCTTTGGTTGTAACCGAATCTT
AGACGCTGGATGGAGGTCACAATGCGATGAACTGCATGTGTATTCATGTGGTTGCAGGTT
GTTGAACGCTGTTGGTAGCCGGGGATTACATCCGTAGCACCTCAACTTGCTCCACTTCTG
TTTACTGTCAACTGTTGGTGGTTTAAAGAATTTTCAGATGATGCTTGCTGGTCACTTTGT
GTATATTCCTCTTATACAATAACGGTGTTACCTTTTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK373462	2144	0.0	367 - 2143	99	1771 / 1777	CUST_28175_PI390587928	ABC06447
MLOC_38029.1	961	0.0	100 - 959	99	855 / 860	None	ABC04589 ABC06447
MLOC_26428.1	986	0.0	1 - 800	100	800 / 800	None	ABC06447
MLOC_59921.1	2449	0.0	864 - 2167	86	1122 / 1304	None	ABC06447
MLOC_59921.2	1794	0.0	720 - 1579	88	757 / 860	None	ABC06447
MLOC_6391.1	2361	1e-150	804 - 2080	75	964 / 1293	CUST_19032_PI390587928	ABC06447
MLOC_55774.5	3232	2e-118	1466 - 2764	73	956 / 1310	CUST_20719_PI390587928 CUST_31154_PI390587928	ABC04589 ABC06447 ABC16998
MLOC_55774.3	3705	7e-118	1799 - 3095	73	954 / 1308	CUST_20719_PI390587928 CUST_31154_PI390587928	ABC04589 ABC06447 ABC16998
MLOC_55774.4	3233	2e-117	1466 - 2765	73	956 / 1311	CUST_20719_PI390587928 CUST_31154_PI390587928	ABC04589 ABC06447 ABC16998