barSeed - Barley Seed Development Database

Probe ABC10231

Source Contig ABC10231

barSeed

Links

Affymetrix Source Sequence (684 bp)

>ABC10231 684
CGCCTGAAGAGGCGACATCCACTAAGAAGGAGGATGCTGCGAAACCTGTGGCCGATGCAA
TGAAGTACGGAGCCATGCCTCAGCAGGCTGCCGGCCAAAATGGTGCTTGAGTGGTGCCTT
ATACACGTATTCATGCGCAACATCATCTGCATACTACCATGCATGCAAAATAGCATTGGA
TATCCCATTATGCTAATTCTCATGCATGCACGCTTTGTTTAAATATTTCCATTGCGAATC
ATGTTGTAATGTCTTGCTTGTTTTACTTCTAGTGGTAAGACACGCCTGACTTGTTAAAAA
CCTAACTTGTTAAAAACAATACAATGATCGATGTATGCATCTGAAAATTAATAATATGAG
TTCAACCATAATTTGTGTTTTTTTGTCAAAAAAAAAAAAAAAAAGGGCGGCCGCGCTGCT
CCGGGCCATCGTCGGCATCGTCCACACATGCCACTGCATGGGGGTGATGCACCGGGACCT
CAAGCCGGAGAACTTCCTCCTGCTCAGCAAAGGGGAAGACTCGCCGCTCAAGGCCACCGA
CTTCGGCCTCTCCGTCTTCTTCAAGGAAGGCGAGGTGTTCAGGGACATCGTCGGCAGCGC
ATACTACATCGCGCCGGAGGTGCTCAAGCGGCGGTACGGCCCCGAGGCTGACATCTGGAG
CATCGGCGTCATGCTCTACATCTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK374325	1398	1e-170	1028 - 1398	95	369 / 387	CUST_37067_PI390587928 CUST_37068_PI390587928	ABC10231
MLOC_72770.1	1826	4e-86	643 - 917	88	244 / 278	CUST_40521_PI390587928	ABC10231
MLOC_54510.2	2247	5e-85	803 - 1069	88	235 / 267	None	ABC10231
MLOC_54510.1	2383	5e-85	1183 - 1449	88	235 / 267	None	ABC10231
MLOC_76003.1	2014	1e-81	598 - 843	89	219 / 246	None	ABC04589 ABC10231