barSeed - Barley Seed Development Database

Probe CUST_4_PI390587928

Source Contig U35_7867

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4_PI390587928	Hv_44K_v2	CCGGCACAGGAGACAAAGTAGTCGCTACTTTCTTTTAACTTTTTATTATTATTACGTTCT	874	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.901	1.838	1.179	0.682	0.173	0.192
Raw	199.310	297.275	171.176	154.658	14.132	17.041

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364859	2198	2e-24	2062 - 2121	100	60 / 60	plus	ABC04589 ABC16157
MLOC	MLOC_68114.1	1992	2e-24	1830 - 1889	100	60 / 60	plus	ABC04589 ABC16157
JLOC1	JLOC1_45034.1	1929	8e-25	1748 - 1807	100	60 / 60	plus
Harvest21	ABC16157	1001	3e-25	875 - 934	100	60 / 60	plus	ABC16157
Harvest35	U35_7867	1001	3e-25	875 - 934	100	60 / 60	plus

Contig Sequence (1001 bp)

>U35_7867 1001 Hv_44K_v2
GAGAGCCTTTCAGAGGAGGAGATTGCAGGATTAAAAGAAATGTTTGAGGCAATGGACACA
GACAATAGTGGTGCAATTACATATGATGAGCTGAAAGAAGGCATGCGAAAGTATGGTTCA
ACACTAAAAGATACTGAGATTCGTGATCTTATGGAAGCGGCGGATGTGGACAACAGTGGA
ACCATTGATTATATAGAATTCATTGCTGCTACATTGCATCTCAATAAACTAGAGCGAGAG
GAACATCTTGTGGCAGCCTTTTCTTATTTTGACAAGGATGGTAGTGGTTACATTACAGTG
GATGAGCTCCAGCAAGCTTGCAAAGAGCATAATATGCCAGATGCTTTTCTTGATGACGTC
ATAATTGAAGCTGACCAGGATAATGATGGTCGCATTGATTATGGAGAGTTTGTTGCGATG
ATGACAAAGGGCAATATGGGGGTTGGGAGGAGAACAATGAGGAACAGCCTGAATATAAGC
ATGACTGAATGAGATGCTGCTAACGGGACACTGCCTGCAAATTTTTGTACGCTGTCAGTT
GTACGTGTGGGCATTCTAATTGGTGGTCCTATAAATCTAACTGGTGCTATTTCGTCCATG
AAATGTAGGGGGAAATCTCCCATGTCTTGCGTGAGCTGGTCATGAAAATGTTCATACAAG
CCGTTGTGTTTGGATTGATTTCTGCAATGCTTCGCTCAGAGCTTTGTTTGGTTCACCATG
TTCAGGTTGCTCAATGGATGGGACTGAGTACGCGCGCAAGAGGTTGCACCTGGACCATGG
ACAGTTGTAGGAGGGCGGCCGGCCATGGAGTGCTCCTATTTTGCTCTCCACGTACTGAAT
AGCTTGAAAACGCGCACCCCTTGCAGTTCTTGGGCCGGCACAGGAGACAAAGTAGTCGCT
ACTTTCTTTTAACTTTTTATTATTATTACGTTCTAAAAAAAGTGCCTACATTTTTATTGC
AAGAGAGTTGCTACTATTCGCTTCCCAAGAAAAAAAAAAAA

Homology of Contig U35_7867 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g46090.1	550	4e-103	protein\|CAMK_CAMK_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi3g51970.1	557	9e-106
Arabidopsis v10	AT2G17290.1	544	4e-89	\| Symbols: CPK6, ATCDPK3, ATCPK6 \| Calcium-dependent protein kinase family protein \| chr2:7517005-7519239 FORWARD LENGTH=544