barSeed - Barley Seed Development Database

Probe ABC04552

Source Contig ABC04552

barSeed

Links

Affymetrix Source Sequence (1062 bp)

>ABC04552 1062
GGATTGTCAGCTAGCTTAGTGCAACAGCCTATCATGTATGCAGAGGAAGAACTCAACAAT
CACACATGCAAGCTAACATTGATCAATTATTAAGGTTGAACACTTATGCTCCCATTGCAA
GGCATAAACATATTTTCTATGTGATTAGTGTGGCTTTTTTCCCTCTCCTTCCGTGGCAAC
GCACGGGCGCTAAGATAATTCCGATGAGTTATCCCTATGAAGATCTCGAGCCCGCCATGG
TAGGACAACTTCGACCATGGAGCGGAGCCCAGCGAGCGGGGTCCGGCACGTGCGGCAAGT
GATTTTTTGTTCTTATTGACGACTTGTTCCTGCACATACGTCTGGAGAAAGCAGATGTAT
ATGATGCTGACTTTGAGAGGCTGAACTGAAGAACGTAAAAAAAAGAGGCTGAACTGAATT
AGGTTGATATGAAGGGATTAACAGCGGATCAACGGGCCACCATAGTGGTGGTGGTCCGTG
ATATTTTAAGATCAAACGGTGAGGCGAGCTCAGTTTGCACAGTCCTCCCCAATGACCATT
TCAGAGCCTGGACATAAATTTCAGCATTCCCTGCAATTCTTGATTTGCGTCGTGCTGCAG
CACACATGGCTCGTCGTCCTACCTGCTTCTGTGCCCTCTACTTCTTCCCACAAGATTGAG
TGGCATGGGTTCTCATTGGGCAAATAAAGAATGTGCTTTCAAGAAGGGAAGTTGCTGAAC
AAAATGGAAGACGACGGGCACGGTGCGGTGCACCTCTGCACCTCTTCGAGAGCGGATATG
GTGGCGGGCGCGTAGTCCAACAGCCGGAGCAATGGTTCCCTATAAGAGGGAAATTTCCAT
ATGATTATTTTGGTACAGAATTATGTGATGATGGAGGATGGAGCTGTCCTTTGAAGAATT
GTTTAATGAACTAAAAAGTAGAAACATCGTGTCTTGTTCATGTGCCAAATCAGCATTGCA
ATGCGCTGACTCATGTGTGGCATCCGTCTATGTTGATTAATGGAACCTTTGATAATCAGT
AGATGCATGCATCACCTATATAATTAATATATGNCAGGTACA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK359765	2841	8e-105	2476 - 2688	99	211 / 213	CUST_36371_PI390587928 CUST_36373_PI390587928 CUST_36375_PI390587928 CUST_22231_PI390587928	ABC04548 ABC04549 ABC04552 ABC43241
AK369904	2451	3e-64	1819 - 1952	100	134 / 134	CUST_36373_PI390587928 CUST_3976_PI390587928 CUST_36374_PI390587928 CUST_29510_PI390587928 CUST_36375_PI390587928	ABC04548 ABC04552 ABC43241
AK363297	4260	7e-71	3997 - 4163	96	160 / 167	CUST_26813_PI390587928 CUST_36375_PI390587928 CUST_36374_PI390587928	ABC04548 ABC04549 ABC04552 ABC43241
AK365184	1604	0.0	826 - 1287	96	446 / 464	CUST_36375_PI390587928	ABC04548 ABC04549 ABC04552 ABC43241
AK354976	2543	7e-71	2099 - 2265	96	160 / 167	CUST_26813_PI390587928 CUST_36375_PI390587928	ABC04548 ABC04549 ABC04552 ABC43241
AK363686	2413	2e-176	1789 - 2131	99	341 / 343	CUST_22231_PI390587928 CUST_36373_PI390587928 CUST_3976_PI390587928	ABC04548 ABC04549 ABC04552 ABC43241
AK364353	3476	3e-64	2770 - 2903	100	134 / 134	CUST_36374_PI390587928 CUST_3976_PI390587928 CUST_22231_PI390587928 CUST_29510_PI390587928	ABC04548 ABC04549 ABC04552 ABC43241
MLOC_47847.1	765	6e-156	292 - 626	96	324 / 336	None	ABC04548 ABC04552 ABC43241
MLOC_47847.2	851	6e-156	292 - 626	96	324 / 336	None	ABC04548 ABC04552 ABC43241
AK359575	2665	5e-147	1926 - 2215	99	288 / 290	CUST_3976_PI390587928 CUST_36372_PI390587928 CUST_22231_PI390587928	ABC04548 ABC04549 ABC04552
MLOC_47848.2	595	2e-146	5 - 334	95	319 / 336	None	ABC04548 ABC04552 ABC43241
MLOC_47848.1	578	8e-130	5 - 286	96	273 / 283	None	ABC04548 ABC04552
MLOC_47847.3	1001	8e-130	292 - 573	96	273 / 283	None	ABC04548 ABC04552
MLOC_26911.9	1742	1e-112	1348 - 1568	100	221 / 221	CUST_36373_PI390587928 CUST_36372_PI390587928	ABC04549 ABC04552
MLOC_26911.3	1563	1e-112	1129 - 1349	100	221 / 221	CUST_36373_PI390587928	ABC04549 ABC04552
MLOC_26911.4	1552	1e-112	1118 - 1338	100	221 / 221	CUST_36373_PI390587928	ABC04549 ABC04552
MLOC_26911.5	1682	1e-112	1248 - 1468	100	221 / 221	CUST_36373_PI390587928 CUST_36372_PI390587928	ABC04549 ABC04552
MLOC_26911.2	1850	1e-112	1468 - 1688	100	221 / 221	CUST_36373_PI390587928 CUST_36372_PI390587928	ABC04549 ABC04552
MLOC_47265.2	178	1e-88	1 - 178	100	178 / 178	None	ABC04552
MLOC_31283.3	1577	3e-84	1 - 197	95	189 / 198	None	ABC04549 ABC04552
AK370209	2276	1e-83	1922 - 2128	94	195 / 207	None	ABC04552
MLOC_31283.6	1893	7e-71	1 - 167	96	161 / 168	None	ABC04549 ABC04552
MLOC_42561.1	1382	3e-69	625 - 791	95	159 / 167	CUST_36374_PI390587928 CUST_26813_PI390587928 CUST_12653_PI390587928	ABC04548 ABC04552 ABC43241
MLOC_42561.3	1005	3e-69	605 - 771	95	159 / 167	CUST_36374_PI390587928	ABC04548 ABC04552 ABC43241
MLOC_42561.2	1476	3e-69	620 - 786	95	159 / 167	CUST_26813_PI390587928 CUST_12653_PI390587928 CUST_36374_PI390587928	ABC04548 ABC04552 ABC43241
MLOC_42560.2	985	3e-69	128 - 294	95	159 / 167	CUST_12653_PI390587928 CUST_26813_PI390587928	ABC04548 ABC04552 ABC43241
MLOC_42560.1	536	3e-69	128 - 294	95	159 / 167	None	ABC04548 ABC04552 ABC43241
MLOC_70316.1	206	1e-68	21 - 204	92	171 / 185	None	ABC04548 ABC04552
MLOC_26573.1	168	2e-66	1 - 168	94	158 / 168	None	ABC04552
MLOC_41966.1	320	3e-64	130 - 263	100	134 / 134	CUST_36374_PI390587928 CUST_29510_PI390587928	ABC04552
MLOC_31283.4	693	1e-63	4 - 151	97	144 / 149	None	ABC04552
MLOC_31283.5	1672	1e-63	4 - 151	97	144 / 149	None	ABC04549 ABC04552
MLOC_41966.2	802	4e-63	128 - 259	100	132 / 132	CUST_36374_PI390587928 CUST_29510_PI390587928	ABC04552
MLOC_41714.1	224	3e-59	89 - 222	98	131 / 134	None	ABC04552
MLOC_26911.8	1081	3e-59	957 - 1081	100	125 / 125	CUST_36373_PI390587928	ABC04549 ABC04552
MLOC_26911.7	1027	2e-57	906 - 1027	100	122 / 122	CUST_36373_PI390587928	ABC04549 ABC04552
MLOC_52808.1	341	2e-51	187 - 318	95	125 / 132	None	ABC04552