barSeed - Barley Seed Development Database

Probe CUST_36375_PI390587928

Source Contig U35_1853

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36375_PI390587928	Hv_44K_v2	AAGATAATTCCGATGAGTTATCCCTATGAAGATCTCGAGCCCGCCATGGTAGGACAACTT	486	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.094	0.993	1.564	1.297	0.777	0.780
Raw	226.927	300.046	439.890	545.169	121.507	131.014

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359765	2841	2e-24	1895 - 1954	100	60 / 60	plus	ABC04548 ABC04549 ABC04552 ABC43241
MLOC	AK363297	4260	2e-24	2662 - 2721	100	60 / 60	plus	ABC04548 ABC04549 ABC04552 ABC43241
MLOC	AK369904	2451	2e-24	564 - 623	100	60 / 60	plus	ABC04548 ABC04552 ABC43241
MLOC	AK365184	1604	2e-24	923 - 982	100	60 / 60	plus	ABC04548 ABC04549 ABC04552 ABC43241
MLOC	AK354976	2543	2e-24	1241 - 1300	100	60 / 60	plus	ABC04548 ABC04549 ABC04552 ABC43241
Harvest21	ABC04552	1062	3e-25	812 - 871	100	60 / 60	minus	ABC04552
Harvest21	ABC04546	1092	3e-25	486 - 545	100	60 / 60	plus
Harvest35	U35_1853	1357	3e-25	487 - 546	100	60 / 60	plus

Contig Sequence (1357 bp)

>U35_1853 1357 Hv_44K_v2
GGTTGTCGATTTTGTTCTTGCCAAAATTGTGTTTCACTTACAGAAGATGCTGTTGTGCGC
CGCTCTGATTGATGTTTTGGTGGATGGTGGTTAGAGTCGACGAATCTGCAGCCCACTCCA
TTGGGCGGCACCGTCAAGATGCTGCCAGCATGTTGCCATTGCTGAACCCAATCCTAGATA
GATTCGTGACTTTCACGTGGACATAGCTGCAAGACGGCCGAGGAGAGGCTGCATCGCCGC
TCGTGGCGACGGTCGCGTGTTCTCTGGTGATGGGGACGATTGTCAGCTAGCTTAGTGCAA
CAACCTATCATGTATGCAGAGGAAGAACTTAACAATCACACATATGCCTATCACTTTGTT
ATACACGACTTCACGCTTTGAATTTATGGGTTGAACACTTATGCTCCCACTGCAAGGCAT
AAACATATTTTCTATGTGATTAGTGTGGCTTTTTTCCCTCTCCTTCCGTGGCAACGCACA
GGCGCTAAGATAATTCCGATGAGTTATCCCTATGAAGATCTCGAGCCCGCCATGGTAGGA
CAACTTCGACCATGGAGCGGAGCCCAGCGAGCGGGGTCCGGCACGTGCGGCAAGTGATTT
TTTGTTCTTATTGACGACTTGTTCCTGCACATACGTCTGGAGAAAGCAGATGTATATGAT
GCTGACTTTGAGAGGCTGAACTGAAGAACGTAAAAAAAAGAGGCTGAACTGAATTAGGTT
GATATGAAGGGATTAACAGCGGATCAACGGGCCACCATAGTGGTGGTGGTCCGTGATATT
TTAAGATCAAACGGTGAGGCGAGCTCAGTTTGCACAGTCCTCCCCAATGACCATTTCAGA
GCCTGGACATAAATTTCAGCATTCCCTGCAATTCTTGATTTGCGTCGTGCTGCAGCACAC
ATGGCTCGTCGTCCTACCTGCTTCTGTGCCCTCTACTTCTTCCCACAAGATTGAGTGGCA
TGGGTTCTCATTGGGCAAATAAAGAATGTGCTTTCAAGAAGGGAAGTTGCTGAACAAAAT
GGAAGACGACGGGCACGGTGCGGTGCACCTCTGCACCTCTTCGAGAGCGGATATGGTGGC
GGGCGCGTAGTCCAACAGCCGGAGCAATGGTTCCCTATAAGAGGGAAATTTCCATATGAT
TATTTTGGTACAGAATTATGTGATGATGGAGGATGGAGCTGTCCTTTGAAGAATTGTTTA
ATGAACTAAAAAGTAGAAACATCGTGTCTTGTTCATGTGCCAAATCAGCATTGCAATGCG
CTGACTCATGTGTGGCATCCGTCTATGTTGATTAATGGAACCTTTGATAATCAGTAGATG
CATGCATCACCTATATAATTAATATATGNCAGGTACA

Homology of Contig U35_1853 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None