barSeed - Barley Seed Development Database

Probe ABC04549

Source Contig ABC04549

barSeed

Links

Affymetrix Source Sequence (1399 bp)

>ABC04549 1399
GAGACGTAAAATCGTCAACCACCCATCCGGGCCATGGACACCAACTCGCGCCCCACCCAG
GAGTCGGATCCCGTGGCCGGCGGCCATGGACCCCAACTCGCGCCCCTCCCACGGGTCGGA
TCCCGCGACTGGCGGCAGCGGCGGCGGCGCTGACCCGACCGAGCCGCCGGCGACTGGTGC
GCGCAGCTCCTGTCCGAGGCGCGCGACAAGATCATCAATAAAATCTTTGATCTGGCCATA
TCCGTACACTCCGGCAGTCCATCTTCCACCTTGCGCCGCTCCTCCGTGACCTGCACGCGT
GCTACGACCCCATCATCTCCACCCGCCTCTTCTGCGCCCTCGTCTTCGTCTGCGACCGCC
GCCTCGCCCACCGCATCCTCGTCCAGGGCGACTCCACCTTCGCCGACCGGCCGCGACTCT
TCGAGCCCGGGCTCCTCTTCACGTCTGGCTCCCGCAACATCAGCGCTGCGCCCTACAGGC
CTTACTGGCGCCTCGTCCGCGGCAACCTCGCTTCCGAGGCGCTGCACCCGGCCTGCGTCA
GCCAGTTCGCGCCCATGAGGCGCCGGATGCGCGACACGCTCGTCCGCGACCTCCGCGTGC
GCGTCGGTGCCGAAGACCGCGTAGAGGTGAGGACGCTGTTCCAAAACGCCATGTTCGACC
TGCTGTTGTACATGAGCCTCGGTGCCACGCTCTCCCCGGAGGTGCTCGACGAGATGCAGG
ACATGCAGCTGTGGGTCGTCCGCACCATCACCGGCTTCCCCATCTCCTCCTTCCCGACGC
TCACCAAGAGGCTCTTCTGCAAGCGATGGGAGGCGCACCTTGCCGTCCGCCGGAGGCAGG
ATGAGATATTGCTCCCGCTGATCGAAGCAAGGCGCTCTGTTTCCATGCCCCGCGGCGCCG
ATGACCCGCCATGCTACGCCGACTCGCTTCTTGCGCTCCGTGTGGCGGACGAAGGCGACC
GCCCACTCACGGACTCTGAGCTCGTCAGCCTCTGCTCCGAGTTCTTGAGCGGTGGCACGG
ACAGCACAGTGACCTTGCTGGAGTGGATCATGGCGGAGCTGGTGAACCATCCAGACAAGC
AGGCCAAGGTCTACGAGGAGGTCAGGAGCAAGCCGGAGCTCAGCGAAGGCGACCTGCAGG
GGATGTCGTACCTGAAGGTCGTCGTCCTCGAGGGGCTGCGGCTCCACCCACCGGCCCACT
TCCTCCTCCCTCATGGCATACAGAGCGACACGGAGGTCGGCGGCTACAGGTTTCCCAAGG
GCGCGGAGGTCAACTTCCTGATCACCGAGTTCGGGCGCTTGGTGAGTTTGCTCCAATATC
GATTATGCATATAGTTTGGTATAAGTTTTTCTCTTCCTTTCTCCGATTGGCCTCTGTGCA
ACTGTGGATGGGGTGGGTG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK363297	4260	4e-114	47 - 270	100	224 / 224	CUST_26813_PI390587928 CUST_36374_PI390587928 CUST_36375_PI390587928	ABC04548 ABC04549 ABC04552 ABC43241
MLOC_31283.12	1816	0.0	737 - 1816	99	1076 / 1081	None	ABC04549
MLOC_31283.1	1761	0.0	682 - 1761	99	1076 / 1081	None	ABC04549
MLOC_31283.6	1893	0.0	814 - 1893	99	1076 / 1081	None	ABC04549 ABC04552
MLOC_31283.7	1466	0.0	387 - 1466	99	1076 / 1081	None	ABC04549
MLOC_31283.8	1557	0.0	478 - 1557	99	1076 / 1081	None	ABC04549
MLOC_31283.9	1657	0.0	578 - 1657	99	1076 / 1081	None	ABC04549
MLOC_31283.11	1574	0.0	495 - 1574	99	1076 / 1081	None	ABC04549
MLOC_31283.2	1614	0.0	535 - 1614	99	1076 / 1081	None	ABC04549
MLOC_31283.5	1672	0.0	593 - 1672	99	1076 / 1081	None	ABC04549 ABC04552
MLOC_31283.3	1577	0.0	498 - 1577	99	1076 / 1081	None	ABC04549 ABC04552
AK359765	2841	0.0	73 - 1393	92	1225 / 1327	CUST_36373_PI390587928 CUST_36371_PI390587928 CUST_22231_PI390587928 CUST_36375_PI390587928	ABC04548 ABC04549 ABC04552 ABC43241
AK363686	2413	0.0	71 - 1391	92	1225 / 1327	CUST_3976_PI390587928 CUST_22231_PI390587928 CUST_36373_PI390587928	ABC04548 ABC04549 ABC04552 ABC43241
AK359575	2665	0.0	66 - 1386	92	1224 / 1327	CUST_22231_PI390587928 CUST_36372_PI390587928 CUST_3976_PI390587928	ABC04548 ABC04549 ABC04552
MLOC_31283.10	1474	0.0	492 - 1474	99	980 / 983	None	ABC04549
AK364353	3476	0.0	7 - 1220	92	1123 / 1216	CUST_3976_PI390587928 CUST_29510_PI390587928 CUST_36374_PI390587928 CUST_22231_PI390587928	ABC04548 ABC04549 ABC04552 ABC43241
AK360529	1787	0.0	186 - 1256	94	1012 / 1072	CUST_27337_PI390587928	ABC04549 ABC10985
MLOC_26911.1	1833	0.0	1 - 817	93	765 / 821	CUST_36372_PI390587928	ABC04549
MLOC_26911.3	1563	0.0	1 - 817	93	765 / 821	CUST_36373_PI390587928	ABC04549 ABC04552
MLOC_26911.4	1552	0.0	1 - 817	93	765 / 821	CUST_36373_PI390587928	ABC04549 ABC04552
MLOC_26911.5	1682	0.0	1 - 817	93	765 / 821	CUST_36372_PI390587928 CUST_36373_PI390587928	ABC04549 ABC04552
MLOC_26911.2	1850	0.0	1 - 817	93	765 / 821	CUST_36373_PI390587928 CUST_36372_PI390587928	ABC04549 ABC04552
MLOC_26911.9	1742	0.0	1 - 816	93	764 / 820	CUST_36373_PI390587928 CUST_36372_PI390587928	ABC04549 ABC04552
MLOC_26911.6	1472	0.0	1 - 816	93	764 / 820	CUST_36372_PI390587928 CUST_36373_PI390587928	ABC04549
MLOC_26911.8	1081	0.0	1 - 720	93	672 / 720	CUST_36373_PI390587928	ABC04549 ABC04552
MLOC_26911.7	1027	0.0	1 - 720	93	672 / 720	CUST_36373_PI390587928	ABC04549 ABC04552
AK353847	1867	0.0	213 - 1250	79	825 / 1046	None	ABC04549
MLOC_77952.1	1736	0.0	402 - 1439	79	822 / 1047	None	ABC04549
MLOC_16634.1	1908	6e-172	680 - 1726	77	821 / 1061	None	ABC04549
AK365184	1604	4e-114	92 - 315	100	224 / 224	CUST_36375_PI390587928	ABC04548 ABC04549 ABC04552 ABC43241
AK354976	2543	4e-114	19 - 242	100	224 / 224	CUST_36375_PI390587928 CUST_26813_PI390587928	ABC04548 ABC04549 ABC04552 ABC43241
MLOC_43437.1	341	3e-80	179 - 341	100	163 / 163	None	ABC04549