barSeed - Barley Seed Development Database

Probe CUST_36373_PI390587928

Source Contig U35_1855

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36373_PI390587928	Hv_44K_v2	TGATGGGGACGATTGTCAGCTAGCTTAGTGCAACAGCCTATCATGTATGCATAGGAAGAA	1696	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.072	1.020	1.204	1.110	0.765	0.676
Raw	260.955	340.306	399.491	537.023	139.078	133.975

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359765	2841	7e-23	1695 - 1754	98	59 / 60	plus	ABC04548 ABC04549 ABC04552 ABC43241
MLOC	AK363686	2413	7e-23	1693 - 1752	98	59 / 60	plus	ABC04548 ABC04549 ABC04552 ABC43241
MLOC	AK369904	2451	7e-23	364 - 423	98	59 / 60	plus	ABC04548 ABC04552 ABC43241
MLOC	MLOC_26911.9	1742	7e-23	1338 - 1397	98	59 / 60	plus	ABC04549 ABC04552
MLOC	MLOC_26911.6	1472	7e-23	1356 - 1415	98	59 / 60	plus	ABC04549
MLOC	MLOC_26911.8	1081	7e-23	947 - 1006	98	59 / 60	plus	ABC04549 ABC04552
MLOC	MLOC_26911.7	1027	7e-23	896 - 955	98	59 / 60	plus	ABC04549 ABC04552
MLOC	MLOC_26911.3	1563	7e-23	1119 - 1178	98	59 / 60	plus	ABC04549 ABC04552
MLOC	MLOC_26911.4	1552	7e-23	1108 - 1167	98	59 / 60	plus	ABC04549 ABC04552
MLOC	MLOC_26911.5	1682	7e-23	1238 - 1297	98	59 / 60	plus	ABC04549 ABC04552
MLOC	MLOC_26911.2	1850	7e-23	1458 - 1517	98	59 / 60	plus	ABC04549 ABC04552
JLOC1	JLOC1_18233.5	1431	4e-23	1106 - 1165	98	59 / 60	plus
JLOC1	JLOC1_18233.4	1220	4e-23	895 - 954	98	59 / 60	plus
JLOC1	JLOC1_18233.3	1271	4e-23	946 - 1005	98	59 / 60	plus
JLOC1	JLOC1_18233.2	1365	4e-23	1040 - 1099	98	59 / 60	plus
JLOC1	JLOC1_18233.1	1515	4e-23	1127 - 1186	98	59 / 60	plus
Harvest21	ABC04547	495	3e-25	435 - 494	100	60 / 60	plus
Harvest21	ABC27740	615	1e-23	277 - 336	98	59 / 60	plus
Harvest21	ABC04546	1092	6e-22	268 - 327	97	58 / 60	plus
Harvest35	U35_1855	1757	3e-25	1697 - 1756	100	60 / 60	plus
Harvest35	U35_28719	615	1e-23	277 - 336	98	59 / 60	plus
Harvest35	U35_1853	1357	6e-22	268 - 327	97	58 / 60	plus

Contig Sequence (1757 bp)

>U35_1855 1757 Hv_44K_v2
GAGACGTAAAATCGTCAACCACCCATCCGGGCCATGGACACCAACTCGCGCCCCACCCAG
GAGTCGGATCCCGTGGCCGGCGGCCATGGACCCCAACTCGCGCCCCTCCCACGGGTCGGA
TCCCGCGACTGGCGGCAGCGGCGGCGGCGCTGACCCGACCGAGCCGCCGGCGACTGGTGC
GCGCAGCTCCTGTCCGAGGCGCGCGACAAGATCATCAATAAAATCTTTGATCTGGCCATA
TCCGTACACTCCGGCAGTCCATCTTCCACCTTGCGCCGCTCCTCCGTGACCTGCACGCGT
GCTACGACCCCATCATCTCCACCCGCCTCTTCTGCGCCCTCGTCTTCGTCTGCGACCGCC
GCCTCGCCCACCGCATCCTCGTCCAGGGCGACTCCACCTTCGCCGACCGGCCGCGACTCT
TCGAGCCCGGGCTCCTCTTCACGTCTGGCTCCCGCAACATCAGCGCTGCGCCCTACAGGC
CTTACTGGCGCCTCGTCCGCGGCAACCTCGCTTCCGAGGCGCTGCACCCGGCCTGCGTCA
GCCAGTTCGCGCCCATGAGGCGCCGGATGCGCGACACGCTCGTCCGCGACCTCCGCGTGC
GCGTCGGTGCCGAAGACCGCGTAGAGGTGAGGACGCTGTTCCAAAACGCCATGTTCGACC
TGCTGTTGTACATGAGCCTCGGTGCCACGCTCTCCCCGGAGGTGCTCGACGAGATGCAGG
ACATGCAGCTGTGGGTCGTCCGCACCATCACCGGCTTCCCCATCTCCTCCTTCCCGACGC
TCACCAAGAGGCTCTTCTGCAAGCGATGGGAGGCGCACCTTGCCGTCCGCCGGAGGCAGG
ATGAGATATTGCTCCCGCTGATCGAAGCAAGGCGCTCTGTTTCCATGCCCCGCGGCGCCG
ATGACCCGCCATGCTACGCCGACTCGCTTCTTGCGCTCCGTGTGGCGGACGAAGGCGACC
GCCCACTCACGGACTCTGAGCTCGTCAGCCTCTGCTCCGAGTTCTTGAGCGGTGGCACGG
ACAGCACAGTGACCTTGCTGGAGTGGATCATGGCGGAGCTGGTGAACCATCCAGACAAGC
AGGCCAAGGTCTACGAGGAGGTCAGGAGCAAGCCGGAGCTCAGCGAAGGCGACCTGCAGG
GGATGTCGTACCTGAAGGTCGTCGTCCTCGAGGGGCTGCGGCTCCACCCACCGGCCCACT
TCCTCCTCCCTCATGGCATACAGAGCGACACGGAGGTCGGCGGCTACAGGTTTCCCAAGG
GCGCGGAGGTCAACTTCCTGATCACCGAGTTCGGACGCTGGGTGAGTTTGCTCCAATATC
TATTATGCATATAGTTTGGTATAAGTTTTTCTCTTCCTTTCTCCGATTCTTTGTGCAGCT
GTGGATGGGTGGGTGCAGAGGGGGCGGTGGAGGTGTACTGTTGTAGATTTTGTTCTTGCC
AAAATTGTGTTTCACTTACAGGAGTTGGTTGAACCAACCTGCTAAATTCGGCACCAGTTC
CTGTCAAACCTTTTTTAAATCAGAGTCGACGAATCTGCAGCGCTCTCTGTTGGGCGGCAC
TGTCGAGATGCTGCCAGCATGTTGCCATTGCTGAACCCAATCCCAGACAAATTCGTGACT
TTCACGTGGACATAGCTGCAAGACAGCCGAGGAGAGGCTGCATCGCCGCGCGTGGCGACG
GTCGTGTGTTCTCTGGTGATGGGGACGATTGTCAGCTAGCTTAGTGCAACAGCCTATCAT
GTATGCATAGGAAGAAC

Homology of Contig U35_1855 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01890.1	505	2e-143	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi3g43890.1	511	6e-167
Arabidopsis v10	AT1G64950.1	510	4e-73	\| Symbols: CYP89A5 \| cytochrome P450, family 89, subfamily A, polypeptide 5 \| chr1:24127587-24129119 FORWARD LENGTH=510