barSeed - Barley Seed Development Database

Probe ABC04470

Source Contig ABC04470

barSeed

Links

Affymetrix Source Sequence (2254 bp)

>ABC04470 2254
GGTTCACCCGAGCTGGAGAGCAGTAGCTGCTATATACTTACTACTACCACGAATACATTT
TGGCCATGGCCCGGCTCTCACTCGCGGCGTGCGCGGTCGCCTTCCACCTATGCCTCCTCG
CCTCCTCGCCCGCCTCCGCCCGCTGGCTCTCCGACGAGGCGGCGCCGGCGGTGAGCGCCG
CCGGCCGTGGGGGCGTCAGGACCAGGTCCGCCTACCACTTTCAGCCCGCCAAGAACTGGC
AGAACGATCCCAATGGTCCCATGTACCACAACGGATTGTACCACTTCTTCTACCAGTACA
ACCCCGACGGCGTGACGTGGGGGAACGGCAACCTGTCGTGGGGACACTCCGTCTCCCTGG
ACCTCGTGAACTGGTTCGCGCTCGACACAGCGCTTGAGCCCAGCCGGTCGTTCGACGCCA
ACGGCTGCTGGTCAGGCTCCGCCACCATCCTCCCCGACGGCAGCCCCGTCATGCTCTACA
CCGGCATCGACGCGCGTGGTGACCAGGTCCAGAACGTCGCCTACCCCAAGAACGCCTCTG
ACCCGCTCCTCGTGGAATGGGTGAAGCCCGAGTACAACCCCGTCATCCCTGTCCCAGCTG
ACATCAAGCGCGACGACTTCCGTGACCCTTCCACGGCGTGGCTCGGCGCCGATGGCCAGT
GGCGCATCGCCGTCGCGGCCCGTGTCCATGACGTTGGGGGTGCCACGCTCATCTACCGGA
GCAAGGACTTCCTGCGCTGGGAACGGAATGCTGACCCGCTTTACTTGGCCCACGCCGCCG
GCATGGTGGAGTGCCCGGACCTGTTCCCGGTGTCCGAGCCCGGAGTGGAGGTGGGGCTCC
CGGCGAGCGGCGCCGGGGCGAGGCACGTGCTGAAGATGAGTGTGATGGACACGGTCCAGG
ACTACTACGTTGTCGGGCGCTACGACGACACGGCGGACACCTTCGTGCCGGAGGACGACG
GTGACTGCCGGAGCTGGCGCCGCCTCGACTACGGCCACGTGTACGCGTCCAAGTCCTTCT
TCGACCCGAGCAAGAACCGGCGCGTGCTCTGGGGCTGGGCCAACGAGTCCGACAGCCTGG
CCGACGACCTCGTCAGGGGATGGTCCGGTGTTCAGACTGTTCCGAGGAAGATATGGCTGG
ACGAAGACGGCAAGCAGCTGCGGCAGTGGCCGATCGAGGAGATCGAGACGCTGAGGAACA
AGCGAGTGAACCTGCTGATACCTGAGGTCAACGCCGGCGGCGTGAACGAGATCATCGGCA
TCGTGGGCGCGCAGGCAGACGTGGAGGTCATGTTCCAGATCCCTGCTCTGGAGCACGCCG
ACGTCCTGGAGCCCAACTGGCTGCTGAACCCGCAGAGCCTGTGCGGCGAGAAGGGCGCGT
CGGTGCCGGGCAGCGTCGGCCCGTTCGGGCTGCTCGTCATGGCCTCCGGCGACATGCAGG
AGCACACCGCCGTCTTCTTCCGGGTGTTCAGGCAGAACGACAAGTACAAGGTGCTCATGT
GCACCGACCTCTCGAAGTCGAGCACCAGAGACGGCGTGTACAAGCCGCCGTACGGGGCCT
TCGTGGACATGGACATCGAGGCGCAAGGGGGCAGCATCTCGCTCAGAACACTGGTCGACC
ACTCGGTGGTGGAGAGCTTCGGCGGCGGCGGCAGGACGTGCATCACGGCGAGGGTGTACC
CGGACCACGTCGTGAACGGCAACAGCCACCTGTACGTGTTCAACAACGGCACCGGCGCCG
TCAAGGTGTCCAGCCTCGACGCGTGGGAGATGGCGACGGCGACCGTGAACGTGCTCCCCG
ACGGGCTGATCGCGGCGAGCTCGGTGAGCGGAGCTCAAGCCTATTAGGATTCGGGAGCTG
GGTTTTCGCTCGGTGGATGGATGGATGGATGGATGGATGGCCATTGTGAATTTCTACGGC
CGATTGGATTTGTCTGCCCAATTGTGGCTAGGTGTACAAATGGAGGCTCCCTCATTGTTT
GTCAGAACAGCACAGAAGAAGGATTCTAGGATGCTGCAAAGGAAAAAGATTGTAGGAAGA
TTTGTGTCTAGGTGTTGGAAGGTTTTGATACTGTCAATAATATAGTACTGGGGTAAAGTA
TAGCACGCATGCCCTGCATGATGGGCGTTGGCATCAGTTTAGAGTGTATTTCCAAGGTGA
AAACGGGTGTCATGTAAAAGTATGATATCCGTTGAGTTGTACAAAATAATACTATTCAAA
TCTATAAGGTATATATTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_57850.1	2151	0.0	1 - 2123	99	2114 / 2127	CUST_29137_PI390587928 CUST_415_PI415269222 CUST_29138_PI390587928	ABC04470
MLOC_57850.4	2087	0.0	92 - 2080	99	1983 / 1993	CUST_29137_PI390587928 CUST_415_PI415269222 CUST_29138_PI390587928	ABC04470
AK367512	2547	0.0	565 - 2541	99	1968 / 1993	CUST_10546_PI390587928 CUST_29137_PI390587928 CUST_415_PI415269222 CUST_29138_PI390587928	ABC04470
MLOC_57850.2	1704	7e-54	1589 - 1704	100	116 / 116	CUST_415_PI415269222	ABC04470
MLOC_57850.7	3610	0.0	2133 - 3610	99	1474 / 1478	CUST_415_PI415269222	ABC04470
MLOC_57850.6	1617	7e-54	1502 - 1617	100	116 / 116	CUST_415_PI415269222	ABC04470
MLOC_57850.5	3698	7e-54	3583 - 3698	100	116 / 116	CUST_415_PI415269222	ABC04470
MLOC_57850.3	3784	7e-54	3669 - 3784	100	116 / 116	CUST_415_PI415269222	ABC04470
MLOC_66871.1	1754	0.0	195 - 1751	84	1316 / 1564	None	ABC04470 ABC15050
AK364085	2091	0.0	377 - 1933	84	1313 / 1564	None	ABC04470 ABC15050
AK374957	1864	0.0	45 - 1777	78	1375 / 1762	CUST_25287_PI390587928	ABC04470 ABC06786 ABC06787
AK357958	2039	0.0	49 - 1794	77	1373 / 1775	None	ABC04470 ABC06786 ABC06787
MLOC_80162.3	2053	0.0	131 - 1712	77	1240 / 1612	CUST_1136_PI390587928 CUST_20959_PI390587928	ABC04470 ABC15050
MLOC_80162.1	2157	0.0	304 - 1853	77	1212 / 1580	CUST_1136_PI390587928 CUST_20959_PI390587928	ABC04470 ABC15050
MLOC_80162.4	1897	0.0	202 - 1731	77	1197 / 1560	None	ABC04470 ABC15050
MLOC_80162.2	1948	2e-178	303 - 1574	76	989 / 1299	CUST_20959_PI390587928	ABC04470 ABC15050
AK372050	1468	1e-116	362 - 611	98	244 / 250	None	ABC04470
MLOC_4176.1	1676	1e-95	3 - 232	95	218 / 230	None	ABC04470