barSeed - Barley Seed Development Database

Probe CUST_29138_PI390587928

Source Contig U35_15818

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29138_PI390587928	Hv_44K_v2	TTCCAAGGTGAAAACGGGTGTCATGTAAAAGTATGATATCCGTTGAGTTGTACAAAATAA	2150	GeneList: saddlebrown MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.842	0.266	0.619	1.589	1.310	1.541
Raw	21.234	9.068	22.793	87.047	25.792	33.237

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367512	2547	2e-24	2454 - 2513	100	60 / 60	plus	ABC04470
MLOC	MLOC_57850.4	2087	2e-24	1993 - 2052	100	60 / 60	plus	ABC04470
MLOC	MLOC_57850.1	2151	2e-24	2036 - 2095	100	60 / 60	plus	ABC04470
JLOC1	JLOC1_37568.2	4398	8e-25	4099 - 4158	100	60 / 60	plus
JLOC1	JLOC1_37568.1	2335	8e-25	2036 - 2095	100	60 / 60	plus
Harvest21	ABC04473	750	3e-25	28 - 87	100	60 / 60	minus
Harvest21	ABC04472	660	3e-25	550 - 609	100	60 / 60	plus
Harvest21	ABC04471	664	3e-25	41 - 100	100	60 / 60	minus
Harvest21	ABC04470	2254	3e-25	2150 - 2209	100	60 / 60	plus	ABC04470
Harvest35	U35_33970	775	3e-25	21 - 80	100	60 / 60	minus
Harvest35	U35_15819	774	3e-25	664 - 723	100	60 / 60	plus
Harvest35	U35_15818	2254	3e-25	2151 - 2210	100	60 / 60	plus

Contig Sequence (2254 bp)

>U35_15818 2254 Hv_44K_v2
GGTTCACCCGAGCTGGAGAGCAGTAGCTGCTATATACTATACTACTACCACGAATACATT
TTGGCCATGGCCCGGCTCTCACTCGCGGCGTGCGCGGTCGCCTTCCACCTATGCCTCCTC
GCCTCCTCGCCCGCCTCCGCCCGCTGGCTCTCCGACGAGGCGGCGCCGGCGGTGAGCGCC
GCCGGCCGTGGGGGCGTCAGGACCAGGTCCGCCTACCACTTCCAGCCCGCCAAGAACTGG
CAGAACGATCCCAATGGTCCCATGTACCACAACGGATTGTACCACTTCTTCTACCAGTAC
AACCCCGACGGCGTGACGTGGGGGAACGGCAACCTGTCGTGGGGACACTCCGTCTCCCTG
GACCTCGTGAACTGGTTCGCGCTCGACACAGCGCTTGAGCCCAGCCGGTCGTTCGACGCC
AACGGCTGCTGGTCAGGCTCCGCCACCATCCTCCCCGACGGCAGCCCCGTCATGCTCTAC
ACCGGCATCGACGCGCGTGGTGACCAGGTCCAGAACGTCGCCTACCCCAAGAACGCCTCT
GACCCGCTCCTCGTGGAATGGGTGAAGCCCGAGTACAACCCCGTCATCCCTGTCCCAGCT
GACATCAAGCGCGACGACTTCCGTGACCCTTCCACGGCGTGGCTCGGCGCCGATGGCCAG
TGGCGCATCGCCGTCGCGGCCCGTGTCCATGACGTTGGGGGTGCCACGCTCATCTACCGG
AGCAAGGACTTCCTGCGCTGGGAACGGAATGCTGACCCGCTTTACTTGGCCCACGCCGCC
GGCATGGTGGAGTGCCCGGACCTGTTCCCGGTGTCCGAGCCCGGAGTGGAGGTGGGGCTC
CCGGCGAGCGGCGCCGGGGCGAGGCACGTGCTGAAGATGAGTGTGATGGACACGGTCCAG
GACTACTACGTTGTCGGGCGCTACGACGACACGGCGGACACCTTCGTGCCGGAGGACGAC
GGTGACTGCCGGAGCTGGCGCCGCCTCGACTACGGCCACGTGTACGCGTCCAAGTCCTTC
TTCGACCCGAGCAAGAACCGGCGCGTGCTCTGGGGCTGGGCCAACGAGTCCGACAGCCTG
GCCGACGACCTCGTCAGGGGATGGTCCGGTGTTCAGACTGTTCCGAGGAAGATATGGCTG
GACGAAGACGGCAAGCAGCTGCGGCAGTGGCCGATCGAGGAGATCGAGACGCTGAGGAAC
AAGCGAGTGAACCTGCTGATACCTGAGGTCAACGCCGGCGGCGTGAACGAGATCATCGGC
ATCGTGGGCGCGCAGGCAGACGTGGAGGTCATGTTCCAGATCCCTGCTCTGGAGCACGCC
GACGTCCTGGAGCCCAACTGGCTGCTGAACCCGCAGAGCCTGTGCGGCGAGAAGGGCGCG
TCGGTGCCGGGCAGCGTCGGCCCGTTCGGGCTGCTCGTCATGGCCTCCGGCGACATGCAG
GAGCACACCGCCGTCTTCTTCCGGGTGTTCAGGCAGAACGACAAGTACAAGGTGCTCATG
TGCACCGACCTCTCGAAGTCGAGCACCAGAGACGGCGTGTACAAGCCGCCGTACGGGGCC
TTCGTGGACATGGACATCGAGGCGCAAGGGGGCAGCATCTCGCTCAGAACACTGGTCGAC
CACTCGGTGGTGGAGAGCTTCGGCGGCGGCGGCAGGACGTGCATCACGGCGAGGGTGTAC
CCGGACCACGTCGTGAACGGCAACAGCCACCTGTACGTGTTCAACAACGGCACCGGCGCC
GTCAAGGTGTCCAGCCTCGACGCGTGGGAGATGGCGACGGCGACCGTGAACGTGCTCCCC
GACGGGCTGATCGCGGCGAGCTCGGTGAGCGGAGCTCAAGCCTATTAGGATTCGGGAGCT
GGGTTTTCGCTCGGTGGATGGATGGATGGATGGATGGATGGCCATTGTGAATTTCTACGG
CCGATTGGATTTGTCTGCCCAATTGTGGCTAGGTGTACAAATGGAGGCTCCCTCATTGTT
TGTCAGAACAGCACAGAAGAAGGATTCTAGGATGCTGCAAAGGAAAAAGATTGTAGGAAG
ATTTGTGTCTAGGTGTTGGAAGGTTTTGATACTGTCAATAATATAGTACTGGGGTAAAGT
ATAGCACGCATGCCCTGCATGATGGGCGTTGGCATCAGTTTAGAGTGTATTTCCAAGGTG
AAAACGGGTGTCATGTAAAAGTATGATATCCGTTGAGTTGTACAAAATAATACTATTCAA
ATCTATAAGGTATATAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15818 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g08072.1	596	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi5g25270.1	620
Arabidopsis v10	AT1G55120.1	594	\| Symbols: ATFRUCT5, AtcwINV3, FRUCT5 \| beta-fructofuranosidase 5 \| chr1:20566617-20569165 FORWARD LENGTH=594