barSeed - Barley Seed Development Database

Probe CUST_1136_PI390587928

Source Contig U35_21154

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1136_PI390587928	Hv_44K_v2	GTCGGTGAATTTTGTGTAACCTTCCCCTTTGTTATTTTGCATTCACGTACGGATGTGGAC	927	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.911	3.345	0.702	0.557	0.942	0.839
Raw	21.866	37.449	5.898	7.566	3.477	3.512

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80162.3	2053	2e-24	1871 - 1930	100	60 / 60	plus	ABC04470 ABC15050
MLOC	MLOC_80162.1	2157	2e-24	2012 - 2071	100	60 / 60	plus	ABC04470 ABC15050
JLOC1	JLOC1_53387.2	2296	8e-25	2117 - 2176	100	60 / 60	plus
JLOC1	JLOC1_53387.1	2099	8e-25	1920 - 1979	100	60 / 60	plus
Harvest21	ABC15050	1009	3e-25	23 - 82	100	60 / 60	minus	ABC15050
Harvest35	U35_21154	1009	3e-25	928 - 987	100	60 / 60	plus

Contig Sequence (1009 bp)

>U35_21154 1009 Hv_44K_v2
TTCTACGACGGCCGCAACAAGGGGCGCGTGCTGTGGGCGTGGGTGGACGAGAACGACGGC
GGCGGCGTCGCCAGAGGGTGGGCCGGCATCCAGGCGTTCCCGAGGGCGATCTGGCTGGAC
GCCGACGGGAAGCGGCTGGTGCAGTGGCCAATCGAGGAGATAGAGACGCTGAGGAGGAAG
CGCGTCGGCCTGCAGTGGGCGACGGAGGTGGAGGCCGGCGGCAGGAAGGAGATCGCCGGC
ATCGTGAGCTCGCAGGCGGACGTGGAGGCGGTCTTCGAGATACCGAACCTGGAGGAGGCA
GAGACGCTGGACCCGAAGTGGCTGCAGGACCCCAAGGGGCTGTCCGCCGAGATGGGCGCC
TCCGGACACGGCGGAGTCGGGCCGTTCGGGCTGCTGGTCTTGGCCTCCGGCGACCTGGAG
GAGCACACCGCCGTCTTCTTCAGGGTGTTCAAGCACGATGGCAAGTACAAGGTCCTCATG
TGCACCGACCTGACAAGGTCGTCGAGGAAAGAGGGGATAAACAAGCCATCCTACGGCGCA
TTTCTGGACGTGGACGTGGAGAAGGACAGGAGCATCTCGCTCAGAACACTGATCGATCAC
ACGGTGGTGGAGAGCTTCGGCGACGGCGGGAGGACGTGCATGACGGCCAGGGTGTACCCG
GAGCACGCCGCGACGGGCAGCAGCCGGCTGTACGCGTTCAACTACGGCGCCGGCGCCGTG
AAGGTGTCCAAGCTCGAGGCGTGGGAGCTGGCGACGGCGGCCGTCAACGGCGGGGGCGCT
ATGTAGCTTGGTTGCGTCGACACTGATGCATGATTTGGAGCCAGCTCGAGTGTGAATTTG
TGGTGGTTTTAACCTATATTGTTGTTCAATAATGAAACATTCTTCAACAAAAATAGAGAT
GAAAAACAACAGCCGTGTCGGCGATCTGTCGGTGAATTTTGTGTAACCTTCCCCTTTGTT
ATTTTGCATTCACGTACGGATGTGGACTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21154 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56930.2	472	5e-122	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi4g07847.1	575	5e-138
Arabidopsis v10	AT3G13790.1	584	6e-77	\| Symbols: ATCWINV1, ATBFRUCT1 \| Glycosyl hydrolases family 32 protein \| chr3:4533084-4535831 REVERSE LENGTH=584