barSeed - Barley Seed Development Database

Probe ABC03675

Source Contig ABC03675

barSeed

Links

Affymetrix Source Sequence (1301 bp)

>ABC03675 1301
GCAACCATTCCATCGGTTCCTGAGCAAGTTCGGTCGGTCGCTTTACCGAGCTAGAAAGGC
AGCAGCTGCTAGCTTCGGGCGCTTTGCAATGGCCTCCTCCAATGCTCTGCTCCTGCTCTT
CTCGGCCGCCTTCTGCTTCCTCGCCCGGCGGGCCGCCGGCGACTACGGCTCGTGGCAGAC
CGCCCACGCCACCTTCTACGGCGGCGGCGACGCGTCCGGCACAATGGGCGGCGCGTGCGG
CTACGGGAACCTGTACAGCACGGGTTACGGCACGAACACGGCGGCGCTGAGCACGGCGCT
GTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAGCTCAAGTGCCAGGGCAGCTCGTG
CGTGCCGGGCAGCATCACCATCACCGCCACCAACCTTTGCCCGCCCAACTACGCGCTGCC
CAACGACGACGGCGGCTGGTGCAACCCGCCGCGCGCCCACTTCGACATGGCAGAGCCCGC
CTACCTCCAGATCGGTATCTACCGCGCCGGCATCGTGCCCGTTTCCTACCGGAGGGTGCC
CTGTGTGAAGAAGGGCGGGATGAGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGT
GCTTGTGACCAACGTGGCCGGCGCCGGCGACGTGCAGTCCGTCTCCATCAAGGGGTCCAG
CTCCGGGTGGCAGGCCATGTCCCGCAACTGGGGCCAGAACTGGCAGAGCAACGCGGACCT
CGACGGCCAGAGCCTCTCCTTCCGGGTCACCCTCAGCGACGGCCGCACCGTCACCAGCAA
CAACGCCGCCCCGGCCGGCTGGTCCTTTGGACAGACCTTCGAAGGAGGCCAGTTCTAGCG
AGCGAGGCTCATGTCTTCTTCTATCATACGCATTGGTTTGGAGCTTGAGCAAGAGAAGAA
GGAAACCTCTTCGTTATTATACTACAGAAGAGGCCTTCGGCTATTCTGAGGCTGCTGCTG
ATCAGCACCCGCTTAGGCCTTTCCTTCTCTCATGCTAGTAGGACATTATCGTAGAGATAA
ATAAGTTATCATTGTGAAGCTGAGCATTTTGATCATTGTTAGTGTAGCCTTGTGTTGTGG
AAACACCGCAAGGTGATCTATTTAAGTGTACTTTTAGTAATACATGCATGGAATGGTGTG
TGGTGTGTGAGAGTATCTTGTAACTTCTCTTGTTGCGTTGTAACCCCCGAATCCTTTCAT
ATGATTGGGAGATGTTTGTGGGGGCACACTTGTTATTTTGGAGACCATGAACAATGCTTG
GTTATGGCTTAACTGTTTAAGTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_73204.3	1425	0.0	1 - 1061	100	1061 / 1061	None	ABC03674 ABC03675
MLOC_73204.1	1725	2e-116	1438 - 1665	100	228 / 228	CUST_30647_PI390587928	ABC03674 ABC03675
AK248822.1	1253	5e-83	953 - 1253	86	267 / 312	CUST_30661_PI390587928	ABC03674 ABC03675
MLOC_74915.2	1096	5e-78	1 - 292	85	258 / 303	CUST_30661_PI390587928	ABC03674 ABC03675
MLOC_73204.2	1576	0.0	885 - 1419	100	535 / 535	None	ABC03674 ABC03675
MLOC_63724.2	1571	0.0	460 - 1178	86	622 / 720	CUST_30661_PI390587928 CUST_279_PI415269222 CUST_30650_PI390587928	ABC03674 ABC03675 ABC36779
MLOC_74915.1	1443	2e-101	2 - 350	86	310 / 360	CUST_30661_PI390587928	ABC03674 ABC03675
AK356936	1094	2e-121	165 - 814	79	516 / 651	CUST_30648_PI390587928 CUST_30649_PI390587928	ABC03674 ABC03675 ABC03676
MLOC_76682.1	1214	2e-121	217 - 866	79	516 / 651	CUST_30649_PI390587928	ABC03674 ABC03675 ABC03676
MLOC_63724.3	1906	5e-93	460 - 765	87	266 / 306	CUST_30661_PI390587928 CUST_279_PI415269222 CUST_30650_PI390587928	ABC03674 ABC03675 ABC36779
MLOC_63724.1	1144	5e-93	550 - 855	87	266 / 306	CUST_30661_PI390587928 CUST_30650_PI390587928	ABC03674 ABC03675 ABC36779