barSeed - Barley Seed Development Database

Probe CUST_30650_PI390587928

Source Contig U35_1070

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30650_PI390587928	Hv_44K_v2	CTTTTGAAGAATTATTTTGGCATTCGCGTGCATGCAGTGCAGGAGGAGGAAGAAACAAAA	938	GeneList: paleturquoise MasterList: Reassembly_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.756	6.239	1.241	0.793	0.274	0.262
Raw	313.868	273.083	47.785	52.895	4.862	4.660

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63724.1	1144	2e-24	409 - 468	100	60 / 60	minus	ABC03674 ABC03675 ABC36779
MLOC	MLOC_63724.2	1571	2e-24	319 - 378	100	60 / 60	minus	ABC03674 ABC03675 ABC36779
MLOC	MLOC_63724.3	1906	2e-24	319 - 378	100	60 / 60	minus	ABC03674 ABC03675 ABC36779
JLOC1	JLOC1_41774.2	1862	8e-25	1193 - 1252	100	60 / 60	plus
JLOC1	JLOC1_41774.1	2123	8e-25	1454 - 1513	100	60 / 60	plus
Harvest21	ABC03674	1330	3e-25	939 - 998	100	60 / 60	plus	ABC03674
Harvest35	U35_1070	1330	3e-25	939 - 998	100	60 / 60	plus

Contig Sequence (1330 bp)

>U35_1070 1330 Hv_44K_v2
GGCCATTTCGAGTCTAGCTAGCTAGCTTTAGACACCATATCCCTCGAAAGCTAAGCTAGC
TTGCTGAGGATACAAGGAAGCTCCCTCCCTCCCTCCCAGCAATGGCCGCTGCCGGCGCTC
TCTTCTTCGTCTTCTCCTCCTTGTGCCTCCTCGCACGACAGGCCGCGGCCGGCGGCTACG
GCGGGTGGCAGAGCGCCCATGCCACCTTCTACGGCGGCGGCGACGCCTCCGGCACGATGG
GCGGGGCGTGCGGGTACGGTAACCTGTACAGCACTGGGTACGGCACGAACACGGCGGCGC
TGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAGCTGCGCTGCG
ACAACGCCGGCAGCTCGTGCCGGCCGGGGTCCATCATGGTGACCGCCACCAACTTCTGCC
CGCCCAACTACGGCCTCCCCAGCGACGACGGCGGCTGGTGCAACCCGCCGCGCCCCCACT
TCGACATGGCCGAGCCGGCCTTCCTCCACATCGCGCAGTACCGCGCCGGCATCGTACCCG
TCTCCTACAGAAGGGTGCCGTGCGTGAAGAAGGGGGGCATCCGGTTCACCATCAACGGCC
ACTCCTACTTCAACCTGGTGCTGGTGACCAACGTGGCCGGCGCCGGCGACGCGCGCTCCG
TGTCCATCAAGGGCACGCGCACCGGCTGGCAGGCCATGTCCCGCAACTGGGGCATGAACT
GGCAGAGCAACACCTTCCTGGACGGCCAGTGCCTCTCCTTCAGGGTCACCTCCAGCGACG
GCCGCACCGTCACCAGCAACGCCGCCGCGCCCGCCGGCTGGCAGTTCGGCCAGACCTTCG
AGGGCGCCCAGTTCTAGTCCACTCCATCTCCATCTCCATCTTCTTCTTCTCCACAGGCAT
AAGCACTGGAGAGAAGAGACGGACTGGGCATATTTGTACTTTTGAAGAATTATTTTGGCA
TTCGCGTGCATGCAGTGCAGGAGGAGGAAGAAACAAAAGCCGGCCTCTTCGTTATAGTGA
AGGAGGGAGGCTCCGGGCTACGCTGAGGCTGCTGATTAGCACCCGCTTAGACGTTTTCCT
TCTCTCGTCTCATCAAAGTCTCGAGTTTATTGAAGACTCGAACAACCATCCATCAACTAC
CGTACGGACGTAGTAGCTTGGCACTCCATGAAGAAAAAGAAGAAAAGAAGTTAATAATTG
CATTAGTCATCACTAGCAAAGCAGTAGTAGCACCTCTCGTGGTTGGTTTGTACTTGTACT
GGGTCGTGGCCTTTGTGATGAAATTGAAGATTGCAAGGGCATATTTATGGATCAAAAAAA
AAAAAAAAAA

Homology of Contig U35_1070 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g39990.1	247	1e-151	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi2g22290.1	252	2e-161
Arabidopsis v10	AT1G26770.2	259	6e-118	\| Symbols: ATEXPA10, AT-EXP10, ATEXP10, ATHEXP ALPHA 1.1, EXP10, EXPA10 \| expansin A10 \| chr1:9259775-9260792 FORWARD LENGTH=259