barSeed - Barley Seed Development Database

Probe CUST_30647_PI390587928

Source Contig U35_1073

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30647_PI390587928	Hv_44K_v2	TGAGAGTATCTTGTAACTTCTCTTGTTGCGTTGTAACCCCCGAATCCTTTCATATGATTG	1177	GeneList: grey60 MasterList: Reassembly_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.885	7.319	1.595	0.762	0.311	0.277
Raw	165.470	241.894	49.359	40.829	3.686	3.302

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73204.1	1725	2e-24	101 - 160	100	60 / 60	minus	ABC03674 ABC03675
JLOC1	JLOC1_48727.1	1712	8e-25	1387 - 1446	100	60 / 60	plus
Harvest21	ABC03675	1301	3e-25	1148 - 1207	100	60 / 60	plus	ABC03675
Harvest35	U35_1073	1323	3e-25	1178 - 1237	100	60 / 60	plus

Contig Sequence (1323 bp)

>U35_1073 1323 Hv_44K_v2
TCGAGCACTGTTGGCCTATTGGACAGCCAAGCAACCATTCCATCGGTTCCTGAGCAAGTT
CGGTCGGTCGCTTTACCGAGCTAGAAAGGCAGCAGCTGCTAGCTTCGGGCGCTTTGCAAT
GGCCTCCTCCAATGCTCTGCTCCTGCTCTTCTCGGCCGCCTTCTGCTTCCTCGCCCGGCG
GGCCGCCGGCGACTACGGCTCGTGGCAGACCGCCCACGCCACCTTCTACGGCGGCGGCGA
CGCGTCCGGCACAATGGGCGGCGCGTGCGGCTACGGGAACCTGTACAGCACGGGTTACGG
CACGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTG
CTACGAGCTCAAGTGCCAGGGCAGCTCGTGCGTGCCGGGCAGCATCACCATCACCGCCAC
CAACCTTTGCCCGCCCAACTACGCGCTGCCCAACGACGACGGCGGCTGGTGCAACCCGCC
GCGCGCCCACTTCGACATGGCAGAGCCCGCCTACCTCCAGATCGGTATCTACCGCGCCGG
CATCGTGCCCGTTTCCTACCGGAGGGTGCCCTGTGTGAAGAAGGGCGGGATGAGGTTCAC
CATCAACGGCCACTCCTACTTCAACCTGGTGCTTGTGACCAACGTGGCCGGCGCCGGCGA
CGTGCAGTCCGTCTCCATCAAGGGGTCCAGCTCCGGGTGGCAGGCCATGTCCCGCAACTG
GGGCCAGAACTGGCAGAGCAACGCGGACCTCGACGGCCAGAGCCTCTCCTTCCGGGTCAC
CCTCAGCGACGGCCGCACCGTCACCAGCAACAACGCCGCCCCGGCCGGCTGGTCCTTTGG
ACAGACCTTCGAAGGAGGCCAGTTCTAGCGAGCGAGGCTCATGTCTTCTTCTATCATACG
CATTGGTTTGGAGCTTGAGCAAGAGAAGAAGGAAACCTCTTCGTTATTATACTACAGAAG
AGGCCTTCGGCTATTCTGAGGCTGCTGCTGATCAGCACCCGCTTAGGCCTTTCCTTCTCT
CATGCTAGTAGGACATTATCGTAGAGATAAATAAGTTATCATTGTGAAGCTGAGCATTTT
GATCATTGTTAGTGTAGCCTTGTGTTGTGGAAACACCGCAAGGTGATCTATTTAAGTGTA
CTTTTAGTAATACATGCATGGAATGGTGTGTGGTGTGTGAGAGTATCTTGTAACTTCTCT
TGTTGCGTTGTAACCCCCGAATCCTTTCATATGATTGGGAGATGTTTGTGGGGGCACACT
TGTTATTTTGGAGACCATGAACAATGCTTGGTTATGGCTTAAAAAAAAAAAAAAAAAAAA
AAA

Homology of Contig U35_1073 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g60770.1	252	6e-139	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi2g53580.1	253	2e-143
Arabidopsis v10	AT1G26770.2	259	5e-113	\| Symbols: ATEXPA10, AT-EXP10, ATEXP10, ATHEXP ALPHA 1.1, EXP10, EXPA10 \| expansin A10 \| chr1:9259775-9260792 FORWARD LENGTH=259