- Probe CUST_30661_PI390587928
- Source Contig U35_1069
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30661_PI390587928 | Hv_44K_v2 | TAAGGTTCACCATTAACGGCCACTCCTACTTCAACCTGGTGCTGGTGACCAACGTGGCCG | 515 | GeneList: blue MasterList: Reassembly_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.008 | 2.091 | 1.355 | 0.654 | 0.146 | 0.165 |
| Raw | 143.386 | 240.479 | 132.042 | 103.689 | 6.887 | 9.551 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248822.1 | 1253 | 2e-24 | 544 - 603 | 100 | 60 / 60 | plus | ABC03674 ABC03675 |
| MLOC | MLOC_74915.1 | 1443 | 2e-24 | 700 - 759 | 100 | 60 / 60 | minus | ABC03674 ABC03675 |
| MLOC | MLOC_74915.2 | 1096 | 2e-24 | 642 - 701 | 100 | 60 / 60 | minus | ABC03674 ABC03675 |
| MLOC | MLOC_63724.1 | 1144 | 3e-21 | 768 - 824 | 98 | 56 / 57 | minus | ABC03674 ABC03675 ABC36779 |
| MLOC | MLOC_63724.2 | 1571 | 3e-21 | 678 - 734 | 98 | 56 / 57 | minus | ABC03674 ABC03675 ABC36779 |
| MLOC | MLOC_63724.3 | 1906 | 3e-21 | 678 - 734 | 98 | 56 / 57 | minus | ABC03674 ABC03675 ABC36779 |
| JLOC1 | JLOC1_49942.1 | 1135 | 8e-25 | 401 - 460 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41774.2 | 1862 | 2e-21 | 837 - 893 | 98 | 56 / 57 | plus | |
| JLOC1 | JLOC1_41774.1 | 2123 | 2e-21 | 1098 - 1154 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC03673 | 590 | 3e-25 | 516 - 575 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03674 | 1330 | 6e-22 | 583 - 639 | 98 | 56 / 57 | plus | ABC03674 |
| Harvest21 | ABC03675 | 1301 | 8e-21 | 563 - 620 | 97 | 56 / 58 | plus | ABC03675 |
| Harvest35 | U35_1069 | 590 | 3e-25 | 516 - 575 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1070 | 1330 | 6e-22 | 583 - 639 | 98 | 56 / 57 | plus | |
| Harvest35 | U35_1073 | 1323 | 8e-21 | 593 - 650 | 97 | 56 / 58 | plus |
Contig Sequence (590 bp)
>U35_1069 590 Hv_44K_v2 CCGAGCAAAGCAACCGAGCTACAAAGGCACCAGCTGCTCTGCAATGGCCTCCTCCAATGC TCTGCTCCTGCTCTTCTCGGCCGCCTTCTGCTTCCTTGCACGGCGGGCCGCCGGCGACTA CGGCTCGTGGCAGACCGCACACGCCACCTTCTACGGCGGCGGCGACGCGTCCGGCACAAT GGGCGGCGCGTGCGGCTACGGGAACCTGTACAGCACGGGTTACGGCACGAACACGGCGGC GCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAGCTCAAGTG CCAGGGCAGCTCGTGCGTGCCGGGCAGCATCACCATCACCGCTACCAACCTCTGCCCGCC CAACTACGCGCTGCCCAACGACGACGGCGGCTGGTGCAACCCACCGCGCGCACACTTCGA CATGGCCGAGCCAGCCTACCTCCAGATCGGTATCTACCGCGCCGGCATCGTGCCCGTTTC CTACCGGAGGGTGCCCTGTGTGAAGAAGGGAGGGATAAGGTTCACCATTAACGGCCACTC CTACTTCAACCTGGTGCTGGTGACCAACGTGGCCGGCGCCGGCGACGTGC
Homology of Contig U35_1069 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g60770.1 | 252 | 1e-95 | protein|expansin precursor, putative, expressed |
| Brachypodium v1_2 | Bradi2g53580.1 | 253 | 2e-98 | |
| Arabidopsis v10 | AT2G40610.1 | 253 | 2e-77 | | Symbols: ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11, EXPA8 | expansin A8 | chr2:16949121-16950472 REVERSE LENGTH=253 |