barSeed - Barley Seed Development Database

Probe ABC03239

Source Contig ABC03239

barSeed

Links

Affymetrix Source Sequence (1348 bp)

>ABC03239 1348
TAGCAATCCTCAGAGAGAAGAACACACTGATAAATTTGTAAGCCATTATGGCTTCCAGCT
CCAGCCGTAAGGCATGGCATTGCTTGCTTACCCTCTTCCTCCTTTCTTCCGGTGCGTATG
GGCAGCTCTCACCGTCATTCTACGCGAGGAGCTGCCCGACGTTGCAGCTCATCGTGCGCG
CCACCATGATCAAGGCGGTCCTCGTCGAGCGCCGGATGGGCGCGTCCCTCCTCAGGCTCC
ACTTCCATGACTGCTTTGTTCAAGGCTGTGACGGGTCCATTCTCTTGGATGACGTGGGTA
GCTTCGTGGGCGAGAAGACGGCCCCCGGGAACAATAACTCGGTGCGGGGCTACGAGGTGA
TCGACCAGATCAAGCGGAACGTGGAGCTGCTCTGCCCCGGCATCGTCTCCTGCGCCGACA
TCGCCGCCCTCGCAGCACGGGACGGCACGGTGCTGCTAGGCGGGCCCACCTGGGCGGTGC
CGCTCGGCCGGCGCGACTCGACGACGGCCAGCATGGCGGAGGCGACCACCGACCTCCCGC
CGCCCAGCTTCGACCTGACCATGCTCATCCAGGCGTTCGAGAAGAAGCAGCTGTGCCCGC
GCGACCTCACGGCGCTCTCCGGCGCGCACACCATCGGCTTCTCGCAGTGCGCCAACTTCC
GCGACCACATCTACAACGGCACCAACGTCGACCCGGCGTTCGCCGCGCTGCGCAAGCGCA
CCTGCCCCGCCCAGCCGCCCAACGGCGACATGAACCTGGCGCCGTTCGACGTGCAGACGC
AGCTCGTCTTCGACAACGCCTACTACTCCAACCTGGTCGCCAAGCGCGGCCTGCTCAACT
CCGACCAGGTGCTCTTCAACGGCGGCTCCCAGGACGCGCTGGTTCGCCAGTACGTCGCTA
ACCCGGCGCTCTTCGCCTCTGACTTTGTGACGGCGATGATCAAGATGGGGAACATCAAGC
CGCTCACCGGAACCGCCGGCCAGATTAGGCGCAACTGCAGGGTCGTCAACAGCTGATCCG
TCCGTCGTCTCATCAATACGTGTTACATGTATATATAGTCGTAAAATCTAAAATATGTAC
GTAAAGTTAGGTTGGCTACGTACAAACCAGCTAGCATGCATGTCAGAATAAGAGCAGTTT
GGTTCAGATAATACCTGGGTAAGTAGCCCTCAAGCTCCAGGGTTGTAAGATAGTTGCTTC
ATCATGTAAGTCGCTCCAGCTCGTGTGCATGCAATCCTCTAGTGGAAGCCAAGCATGTAT
GTATGGCTTTTTATGCAATACTTGAGTGAGATTTGCAGGAAAACTGAGAGAGGAAACAAA
ATATGATGTGTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK361150	1440	0.0	19 - 1346	98	1309 / 1335	CUST_8894_PI390587928 CUST_80_PI415269222	ABC03239 ABC03241 ABC03243 ABC39533 ABC42502
MLOC_79567.1	1416	0.0	226 - 1397	92	1080 / 1175	CUST_8893_PI390587928	ABC03239 ABC03241 ABC03243 ABC39533 ABC42502 ABC45380
MLOC_39255.1	869	0.0	1 - 758	100	758 / 758	None	ABC03239 ABC03241 ABC03243
AK359731	1263	0.0	56 - 1043	87	859 / 992	CUST_13901_PI390587928	ABC03239 ABC03241 ABC03243 ABC17982 ABC18975
MLOC_14814.1	1426	0.0	74 - 1044	85	831 / 979	CUST_24234_PI390587928 CUST_6860_PI390587928	ABC03239 ABC03241 ABC03243 ABC42502
MLOC_39255.2	474	0.0	12 - 466	100	455 / 455	None	ABC03239 ABC03243
AK251101.1	1784	0.0	63 - 731	89	598 / 672	CUST_10813_PI390587928	ABC01815 ABC03239 ABC03243
MLOC_54023.1	1409	0.0	278 - 1159	81	717 / 887	None	ABC03239 ABC03241
MLOC_39593.1	237	2e-121	1 - 237	100	237 / 237	CUST_8894_PI390587928 CUST_80_PI415269222	ABC03239 ABC03243 ABC39533