barSeed - Barley Seed Development Database

Probe CUST_10813_PI390587928

Source Contig U35_14264

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10813_PI390587928	Hv_44K_v2	CTGCGTGCATGCTTGTAATATTTATATCGTGCTATGAAAATTAGTGCATTGCATCTCTAA	1051	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.605	3.980	1.284	0.741	0.209	0.240
Raw	1500.011	2160.654	567.601	551.769	51.190	64.470

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251101.1	1784	7e-23	1726 - 1782	100	57 / 57	plus	ABC01815 ABC03239 ABC03243
JLOC1	JLOC1_31673.1	1495	1e-23	1256 - 1313	100	58 / 58	plus
Harvest21	ABC01815	1146	3e-25	1052 - 1111	100	60 / 60	plus	ABC01815
Harvest35	U35_14264	1128	3e-25	1052 - 1111	100	60 / 60	plus

Contig Sequence (1128 bp)

>U35_14264 1128 Hv_44K_v2
CACGTTCCTCTCTCCTTTTGTAGCAGTGGGTGAGTTTTGGAGCACACACTTTCATCTCAG
TCTCTACCACACACACCGCGTCTGCCTCATCTCTCGGAGCAGCAGGAGGAGGAGCTTGCA
GGAACAATGGCGGCCCAGGGTCTTCTCTCTGGGAGGCAGCTGCTGGGTAGGCCTCTGCAG
TCTTCCTTCTCCAGGTCGTCTTCCTCCCGGAAGTCCCCCTTCGTCGTCAGGGCATCGTCC
AGCCCCCCTGCCAAGCAAAATGACAACAGGCAGCTGTGGTTCGCGTCCAAGCAGTCCCTC
ACCTACCTCGACGGCACGCTGCCTGGTGACTTTGGCTTCGACCCCTTGGGGCTGTCCGAC
CCGGAGGGCACCGGCGGGTTCATCGAGCCCAGGTGGCTGGCCTACGGCGAGATCTTCAAC
GGCCGGACGGCGATGATGGGGGTGGTGGGCATGATCGCCCCGGAGGCCCTGGGCAAGGTG
GGTCTGGTGCCCCCGGAGACGGCGATCCCGTGGTTCCAGGCGGGCGCCATCCCGCCGGCA
GGCACCTACCAGTACTGGGCCGACCCCTACACGCTCTTCGTGTTCGAGATGGCACTGATC
GGCTTCGCAGAGCACCGGCGGCTCCAGGACTGGTACAACCCGGGTTCCATGGGGAAGCAG
TACTTCCTGGGTCTCGAGAAGTACCTCGGCGGCTCCGGCGACCCCGCCTACCCCGGCGGG
CCCATCTTCAACCCACTCGGGTTCGGCACCAAGAGCGAGAAGGAGATGAAGGAGCTCAAG
CTCAAGGAGATCAAGAACGGCCGTCTCGCCATGCTCGCCTTCCTCGGCATGTCGCTGCAG
GCCATCTTCACCGGCGTCGGGCCCTTCCAGAACCTCCTCGACCACCTCTCCGACCCCGTC
AACAACAACATCCTCACCAGCCTCAAGTTCCACTAGGCGAAATCCGAGCATCGTCGTCCT
GTGCATGGTACCCGTCTGTCGTCGTGGGAAACGTGAGCGCGCGAGCGGTATATATGCGAG
GGTGGGTGTAAAATGTAAATTTGTACGCGTGCTGCGTGCATGCTTGTAATATTTATATCG
TGCTATGAAAATTAGTGCATTGCATCTCTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14264 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10390.1	270	2e-146	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi3g07190.1	270	5e-162
Arabidopsis v10	AT1G61520.1	273	6e-131	\| Symbols: LHCA3 \| photosystem I light harvesting complex gene 3 \| chr1:22700152-22701149 FORWARD LENGTH=273