barSeed - Barley Seed Development Database

Probe ABC02999

Source Contig ABC02999

barSeed

Links

Affymetrix Source Sequence (1217 bp)

>ABC02999 1217
GCCGTCATGGTCCTTCACCTACTCCGGCATTGGACTCTCCCTGGGCATCACCCAAACCAT
ATCCAATGGTGGAATCAAGGGCAGCCTCACAGGCATCAGCATCGGCGTCGGTATCACGGC
CACGCAGAAGGTGTGGCGCAGCCTGCAGGCATTTGGCGACATCGCCTTCGCCTACTCCTT
CTCCAACATCCTCATAGAAATCCAGGACACGATCAGGGCGCCGCCGCCGTCTGAGGCGAA
GGTGATGAAGCAGGCGACGCGGCTAAGCGTGGCGACGACGACAGTGTTCTACATGCTGTG
CGGGTGCATGGGGTACGCGGCGTTCGGCGACGCAGCCCCCGACAACCTCCTCACCGGCTT
CGGATTCTACGAGCCCTTCTGGCTGCTGGACATCGCCAACGTGGCCATCGTCGTCCACCT
CGTCGGCGCCTACCAGGTCTTCTGCCAGCCCATCTTCGCCTTCGTCGAGCGCTGGGCTGC
GTCCACATGGCCCGACAGCGTCTTCATCTCCCGCGAGTTCCGGGTGGGGCCATTCGCGCT
CAGCGTGTTCCGGCTCACGTGGCGGTCGGCGTTCGTCTGCCTCACCACCGTCTTCGCCAT
GCTGCTCCCCTTCTTCGGCAACGTGGTGGGACTTCTGGGAGCCGTCTCCTTCTGGCCGCT
CACCGTCTACTTCCCCGTCGAGATGTACATCAGGCAGCGCGGCGTGCCCGGGAGGAGCAC
GCAGGGGATCTGCCTTAGGATGCTCAGCGTCGGATGCCTCATCGTGTCCATCGCCGCCGC
AGCGGGCTCCATCGCCAACGTTATCGAAGCGCTCAAAGTGTACAAGCCGTTCAGCGGCTG
ATTAGCACCACCTGCACCAATTCCCCTCCCTACCGAAATGATTATAGTTGAAAACAACTA
TAATTATTTACATACAAAGGAAGTAGTTATAACTGTATGCAATACATACATTACATACAC
CGCTAAACGTTCGCCGAAAGGCCCTTGTTGAACCTAGTTATAGTACCTAACGGACTGGGC
GGCCTTTGGTTGCATTTTCTTGGAAAATGAGGGGCCTATGCTGAACGGCAGGAGGTGCTC
TCTGTAACGAAGAGTAAGAGCGTAGCGTGCCCTATGCAAAATAGTTCCGTTCTTTGTGAA
GGGATTCTAATTCTGTACCGGAGGAAAAAACATACAGTACATATGCGCTTAAACATGATT
AAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_37989.3	1986	0.0	770 - 1975	99	1206 / 1207	CUST_6583_PI390587928 CUST_6587_PI390587928	ABC02996 ABC02999 ABC35448
MLOC_37989.2	2247	1e-69	1002 - 1145	100	144 / 144	CUST_6583_PI390587928 CUST_6587_PI390587928	ABC02996 ABC02999 ABC35448
MLOC_58471.3	1797	0.0	707 - 1546	86	725 / 842	None	ABC02996 ABC02999 ABC35448
MLOC_58471.1	2063	0.0	990 - 1829	86	725 / 842	CUST_6585_PI390587928	ABC02996 ABC02999 ABC35448
MLOC_58471.4	1953	0.0	881 - 1519	87	558 / 639	CUST_6585_PI390587928	ABC02996 ABC02999 ABC35448
MLOC_58471.2	2096	0.0	1213 - 1851	87	558 / 639	CUST_6585_PI390587928	ABC02996 ABC02999 ABC35448
AK252705.1	1924	2e-136	775 - 1575	78	632 / 810	CUST_4261_PI390587928 CUST_28386_PI390587928	ABC02996 ABC02999 ABC39745
AK364124	1922	9e-130	789 - 1589	78	628 / 810	CUST_39627_PI390587928	ABC02996 ABC02999 ABC39745
MLOC_73207.2	1980	1e-114	846 - 1576	78	577 / 744	CUST_17035_PI390587928 CUST_39628_PI390587928	ABC02996 ABC02999 ABC14547 ABC39745
MLOC_73207.1	1941	1e-114	807 - 1537	78	577 / 744	CUST_39628_PI390587928 CUST_17035_PI390587928	ABC02996 ABC02999 ABC14547 ABC39745
MLOC_37989.1	1196	6e-102	838 - 1042	99	205 / 206	CUST_6587_PI390587928	ABC02996 ABC02999
MLOC_40272.1	499	6e-67	12 - 494	77	375 / 488	None	ABC02996 ABC02999 ABC39745
MLOC_9930.3	2161	2e-66	819 - 1168	80	286 / 357	CUST_24487_PI390587928	ABC02996 ABC02999 ABC13524 ABC14547 ABC47145
MLOC_9930.2	2162	3e-65	819 - 1169	80	286 / 358	CUST_24487_PI390587928	ABC02996 ABC02999 ABC13524 ABC14547 ABC47145
MLOC_9930.1	2163	1e-63	819 - 1170	80	286 / 359	CUST_24487_PI390587928	ABC02996 ABC02999 ABC13524 ABC14547 ABC47145
MLOC_47904.1	1070	5e-58	1 - 298	80	243 / 302	CUST_28386_PI390587928	ABC02996 ABC02999