barSeed - Barley Seed Development Database

Probe CUST_6583_PI390587928

Source Contig U35_782

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6583_PI390587928	Hv_44K_v2	GGATTCTAATTCTGTACCGGAGGAAAAAACATACAGTACATATGCGCTTAAACATGATTA	1141	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.918	2.080	0.871	0.676	1.236	1.147
Raw	3.430	17.140	5.112	6.527	2.830	4.338

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37989.3	1986	2e-24	1910 - 1969	100	60 / 60	plus	ABC02996 ABC02999 ABC35448
MLOC	MLOC_37989.2	2247	2e-24	2181 - 2240	100	60 / 60	plus	ABC02996 ABC02999 ABC35448
JLOC1	JLOC1_24650.1	2478	8e-25	1952 - 2011	100	60 / 60	plus
Harvest21	ABC02999	1217	3e-25	17 - 76	100	60 / 60	minus	ABC02999
Harvest35	U35_782	1235	3e-25	1142 - 1201	100	60 / 60	plus

Contig Sequence (1235 bp)

>U35_782 1235 Hv_44K_v2
GCCGTCATGGTCCTTCACCTACTCCGGCATTGGACTCTCCCTGGGCATCACCCAAACCAT
ATCCAATGGTGGAATCAAGGGCAGCCTCACAGGCATCAGCATCGGCGTCGGTATCACGGC
CACGCAGAAGGTGTGGCGCAGCCTGCAGGCATTTGGCGACATCGCCTTCGCCTACTCCTT
CTCCAACATCCTCATAGAAATCCAGGACACGATCAGGGCGCCGCCGCCGTCTGAGGCGAA
GGTGATGAAGCAGGCGACGCGGCTAAGCGTGGCGACGACGACAGTGTTCTACATGCTGTG
CGGGTGCATGGGGTACGCGGCGTTCGGCGACGCAGCCCCCGACAACCTCCTCACCGGCTT
CGGATTCTACGAGCCCTTCTGGCTGCTGGACATCGCCAACGTGGCCATCGTCGTCCACCT
CGTCGGCGCCTACCAGGTCTTCTGCCAGCCCATCTTCGCCTTCGTCGAGCGCTGGGCTGC
GTCCACATGGCCCGACAGCGTCTTCATCTCCCGCGAGTTCCGGGTGGGGCCATTCGCGCT
CAGCGTGTTCCGGCTCACGTGGCGGTCGGCGTTCGTCTGCCTCACCACCGTCTTCGCCAT
GCTGCTCCCCTTCTTCGGCAACGTGGTGGGACTTCTGGGAGCCGTCTCCTTCTGGCCGCT
CACCGTCTACTTCCCCGTCGAGATGTACATCAGGCAGCGCGGCGTGCCCGGGAGGAGCAC
GCAGGGGATCTGCCTTAGGATGCTCAGCGTCGGATGCCTCATCGTGTCCATCGCCGCCGC
AGCGGGCTCCATCGCCAACGTTATCGAAGCGCTCAAAGTGTACAAGCCGTTCAGCGGCTG
ATTAGCACCACCTGCACCAATTCCCCTCCCTACCGAAATGATTATAGTTGAAAACAACTA
TAATTATTTACATACAAAGGAAGTAGTTATAACTGTATGCAATACATACATTACATACAC
CGCTAAACGTTCGCCGAAAGGCCCTTGTTGAACCTAGTTATAGTACCTAACGGACTGGGC
GGCCTTTGGTTGCATTTTCTTGGAAAATGAGGGGCCTATGCTGAACGGCAGGAGGTGCTC
TCTGTAACGAAGAGTAAGAGCGTAGCGTGCCCTATGCAAAATAGTTCCGTTCTTTGTGAA
GGGATTCTAATTCTGTACCGGAGGAAAAAACATACAGTACATATGCGCTTAAACATGATT
AAAAAAATCAGTTTTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_782 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g08130.1	476	1e-158	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi4g41030.1	480	2e-162
Arabidopsis v10	AT5G63850.1	466	1e-119	\| Symbols: AAP4 \| amino acid permease 4 \| chr5:25551494-25553374 FORWARD LENGTH=466