barSeed - Barley Seed Development Database

Probe CUST_6585_PI390587928

Source Contig U35_781

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6585_PI390587928	Hv_44K_v2	AGCACCCTGTAGATACTTGTATTTTCCTCATGAAAGGACTCCTTACCTGCATTTAAAAAA	1698	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.891	1.073	0.482	1.198	1.047	1.121
Raw	621.578	1254.504	473.762	1806.715	565.374	662.216

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58471.4	1953	3e-21	1645 - 1698	100	54 / 54	plus	ABC02996 ABC02999 ABC35448
MLOC	MLOC_58471.2	2096	3e-21	1977 - 2030	100	54 / 54	plus	ABC02996 ABC02999 ABC35448
MLOC	MLOC_58471.1	2063	3e-21	1955 - 2008	100	54 / 54	plus	ABC02996 ABC02999 ABC35448
JLOC1	JLOC1_37993.1	2027	2e-21	125 - 178	100	54 / 54	minus
JLOC1	JLOC1_37992.1	2406	2e-21	1881 - 1934	100	54 / 54	plus
Harvest21	ABC02996	1811	6e-22	1669 - 1722	100	54 / 54	plus	ABC02996
Harvest35	U35_781	1841	3e-25	1699 - 1758	100	60 / 60	plus
Harvest35	U35_35057	855	6e-22	114 - 167	100	54 / 54	minus

Contig Sequence (1841 bp)

>U35_781 1841 Hv_44K_v2
TCGAGCACTGTTGGCCGACTGGACCCACAAGAACCACCACTCCAAGCTCCCCGCTAGCTA
ATAATCAATCCCACCGGCGAAACACACGCCAGTTGCCATCGTTTTCCCGATGGAGAAGAA
GCAGGCGAGCTACGGGAAGGGCGCGGCCAGGATGGCGCCCATGGAGGTGTCCGTGGAGGC
CGGGAACGGCCGGGAGTCCGACTGGCTTGACGACGACGGGCGGCCGCGTCGGTCGGGCAC
GGTGTGGACGGCGAGCGCCCACATCATCACCGCCGTCATCGGCTCCGGGGTCCTCTCGCT
GGCCTGGGCCATCGCGCAGCTCGGCTGGGCGGCGGGCCCCGCCATCATGCTCCTGTTCGC
GCTCGTCATCTACTACACCTCCACGCTCCTCGCCGAGTGCTACCGCTCCGGCGACCCGGA
GACCGGCAAGCGCCACTACACCTACATGGACGCCGTCCGCTCCTACCTCCCGGGCACCAA
GGTGAAGCTCTGCGGCGTCATCCAGTACGCCAACCTCGTCGGCGTCGCCATCGGCTACAC
CATCGCCGCCTCCATCAGCATGCGGGCGGTCAGGAGGGCGGACTGCTTCCATTACCACGA
CGTCAGGGGCCGCAGCGGGAAGGACTCGTGCAAGAGCTCCAGCAACCCCTACATGATCGT
GTTCGGGGTAGTGCAGATCCTCTTCTCGCAGATACCCGACTTCGACCAGATATGGTGGCT
CTCCATCGTCGCCGCCGTCATGTCCTTCACCTACTCCACCATCGGCCTCGGCCTCGGCAT
CGCCCAGACGGTCGCCAACGGTGGCATCCAGGGCAGCCTAACCGGCCTCAGCGTCGGGCC
AGGCGTCACCTCCATGCAGAAGGTGTGGCGCAGCCTCCAGGCCTTCGGCAACATCGCCTT
CGCCTACTCCTACTCCATCATCCTCATCGAAATCCAGGACACGGTGAAGGCGCCGCCGCC
GTCGGAGGCGAAGGTGATGAAGAAGGCGACGGGGATAAGCGTGGCGACGACGACGGTGTT
CTACATGCTGTGCGGGTGCATGGGGTACGCGGCGTTCGGCGACGCGGCGCCCGACAACCT
CCTCACGGGGTTCGGCTTCTACGAGCCCTTCTGGCTGCTGGACGTGGCCAACGCCGCCAT
CGTGGTGCACCTCGTCGGCGCCTACCAGGTCTTCTGCCAGCCCCTCTTCGCCTTCGTCGA
GAAGTGGGCGGCGGCGAGGTGGCCCGACAGCGCCTTCATCGCCCGGGAGCTCCGCGTGGG
GCCCTTGGCCATCAGCGTCTTCCGGCTCACATGGCGCACGGCCTTCGTCTGCCTCACCAC
CGTCGTCTCCATGCTGCTCCCCTTCTTCGGCGACGTCGTGGGGCTCCTCGGCGCCGTCGC
CTTCTGGCCGCTCACCGTCTACTTCCCCGTGGAGATGTACATCGTGCAGCGCGGCGTGCC
AAGGGGGAGCACGCGGTGGGTTTGCCTCCAGATGCTCAGCGCCGCCTGCCTCGTCGTGTC
CGTCGCCGCCGCGGCCGGCTCCATAGCCGACGTCATCGGCGAGCTCAAGGAGTACCGGCC
GTTCAGCGGCTGAGGGATATTTTGTGTAGGGTGGTGGGTAGCACAGCGGCACATGGGGGC
ACATGTGCACGTACGGCTTGTGTGCTGCATGGAGACGGAGACAAAGTACCAAGCTTCTTG
CGTCAACTTTTATCAAGTAGCACCCTGTAGATACTTGTATTTTCCTCATGAAAGGACTCC
TTACCTGCATTTAAAAAAAAAAAATCTTCCTTGGTAATACTACTGTATTTCAAGAATCAA
ATTAAGAGGGCTTTGTCCATTCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_781 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g08090.1	476	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi4g41030.1	480
Arabidopsis v10	AT1G77380.1	476	\| Symbols: AAP3, ATAAP3 \| amino acid permease 3 \| chr1:29075201-29077252 REVERSE LENGTH=476