barSeed - Barley Seed Development Database

Probe ABC02507

Source Contig ABC02507

barSeed

Links

Affymetrix Source Sequence (1896 bp)

>ABC02507 1896
GAAAACGCCGTGCCGTGTTTCTGGCGATCGGCATCGCACGCACGCACCTGGCACCTCCCT
CGCCCGGATTCCCTCCCACCGCTCTTTTAGCACCTGCCCCCCGTTGCTTGCGTCCAACTC
AACTCCACTCCCCCGCCTCCTCCCCTCTCCCATCTGCTCTGCTCTGCTCGTCCCTACCTG
CGATCGCCGCGGCTACCAGCCAGCCAGGCCCGCCATGGACGAGGAGTACGACGTGATCGT
GCTGGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAA
GGTTTTGCACATGGATAGAAATGACTACTACGGAGGAGATTCCACCTCCCTCAACTTGAA
TCAGCTCTGGAAGAAGTTTAGGGGGGAAGATAAACCACCGGCGCATTTAGGTGCCAGCAG
AGACTACAATGTAGACATGGTTCCAAAGTTTATGATGGCGAATGGAACTTTGGTTCGTAC
TCTCATTCACACTGATGTGACGAAGTATCTGTCTTTCAAAGCTGTTGATGGAAGCTATGT
CTTCAGCAAAGGGAAGATTCACAAGGTTCCTGCCACTGACATGGAGGCTCTAAAATCCCC
TTTGATGGGCATATTTGAGAAACGTAGAGCAAGGAACTTCTTCATTTATGTCCAAGATTA
CAATGATGCTGATCCAAAAACACATCAAGGATTGGACCTTACAAGGATGACAACTAGAGA
ATTGATCGCGAAACACGGATTGAGTGATGATACTATAGATTTCATTGGCCATGCGCTTGC
TCTTCACAGGGATGATCGCTACCTAAGCGAGCCAGCACTTGATACTGTTAAAAGAATGAA
ACTCTATTCCGAGTCTCTTGCACGGTTCCAAGGAGGCTCACCTTATATTTACCCATTATA
TGGGTTGGGTGAGCTGCCACAGGCTTTTGCACGTCTAAGTGCTGTTTATGGCGGTACTTA
CATGTTAAATAAGCCAGAGTGCAAGGTTGAATTTGATATGGAGGGGAAAGTATGTGGTGT
TACATCAGAAGGTGAAACTGCTAAGTGCAAGAAGGTTGTCTGTGATCCTTCTTACTTGGC
CAACAAGGTAAGGAAGATTGGAAAAGTTGCACGAGCAATTGCTATTATGAGCCACCCAAT
TCCAAATGCAAATGATTCCCACTCGGTTCAGATTATTTTACCACAAAAGCAACTTGGGCG
CAAGTCAGACATGTATGTCTTCTGTTGCTCGTACACTCACAATGTCGCGCCAAAAGGGAA
GTTCATTGCGTTTGTGTCTGCCGAAGCGGAGACTGATAACCCACAGTCTGAACTAAAGCC
TGGAATTGATCTACTTGGTCCAGTAGATGAATTGTTTTTTGATATGTATGACAGATATGA
ACCAGTCAATGAACCTTCTCTCGATAATTGCTTTGTCTCATCGAGTTATGACGCCACTAC
TCACTTTGAGACAACTGTGACAGATGTTCTTAATATGTACACACTGATTACTGGAAAGAC
TGTTGATCTTAGTGTCGATCTCAGTGCTGCCAGCGCTGCAGAAGAGTATTAGATCTCATC
AAACCCAGTATTTTCTTCAAGACATACTTCCTGGAGGTACACCACCAGAATCCTACTGCG
TGATGGTCACTTGTGACATCAGCTGTGTACTGTGTAGGAGTTCAGGTCCACGCCTGCTAG
CAGCACTACGCGAAATTATTATCTGTGGAATGGTGCTGGTTTCCTTCGTTAACTTCCTTA
TTGATCCACTGGGTTGTAAACATTATTCTGTACTAACAATGGCTTTAGCATGTTGATGTC
CGTCTTGTGGATGTGTTCTACAGTTATACATATTGGTGTCTTGGACGTATTTTCCTTCCA
AGTAAGATCTACGTGGTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK361995	1725	0.0	2 - 1725	99	1721 / 1724	None	ABC02506 ABC02507 ABC17153
MLOC_55039.6	1751	0.0	1 - 1330	100	1330 / 1330	None	ABC02506 ABC02507 ABC17153
MLOC_55039.4	1287	0.0	6 - 1287	99	1278 / 1282	None	ABC02506 ABC02507 ABC17153
MLOC_55039.2	2096	0.0	1113 - 1654	100	542 / 542	None	ABC02506 ABC02507 ABC17153
AK369742	1785	0.0	95 - 1447	88	1186 / 1353	CUST_6636_PI390587928	ABC02506 ABC02507 ABC17153
MLOC_55039.1	1233	5e-134	857 - 1116	100	260 / 260	None	ABC02506 ABC02507
MLOC_55039.3	1894	0.0	794 - 1483	100	690 / 690	None	ABC02506 ABC02507 ABC17153
MLOC_55039.5	1343	0.0	715 - 1342	100	628 / 628	None	ABC02506 ABC02507 ABC17153
MLOC_55039.7	1190	0.0	1 - 480	99	480 / 481	None	ABC02506 ABC02507
AK369624	1696	0.0	112 - 1441	79	1055 / 1334	CUST_38086_PI390587928 CUST_14185_PI390587928	ABC02506 ABC02507 ABC17153 ABC37332
MLOC_12434.1	1413	0.0	344 - 1177	86	720 / 834	CUST_6636_PI390587928	ABC02506 ABC02507
AK359796	1270	0.0	276 - 993	87	622 / 718	CUST_6636_PI390587928	ABC02506 ABC02507
MLOC_10561.1	1488	0.0	251 - 1434	78	925 / 1188	CUST_38086_PI390587928 CUST_14185_PI390587928	ABC02506 ABC02507 ABC17153 ABC37332
MLOC_12434.2	1451	0.0	250 - 892	86	555 / 643	CUST_6636_PI390587928	ABC02506 ABC02507
AK365759	750	8e-172	3 - 330	100	328 / 328	None	ABC02506 ABC02507 ABC17153
MLOC_16225.1	712	8e-157	283 - 712	90	387 / 430	None	ABC02506 ABC02507 ABC17153
MLOC_19815.1	467	2e-148	159 - 465	98	301 / 307	None	ABC02507
MLOC_10561.2	887	1e-105	208 - 833	78	488 / 627	CUST_38086_PI390587928	ABC02506 ABC02507 ABC17153
AK358049	2345	7e-68	286 - 435	98	147 / 150	CUST_27472_PI390587928 CUST_42222_PI390587928	ABC02507 ABC02804 ABC02809 ABC02810 ABC02811 ABC42898 ABC50535
MLOC_29282.1	708	3e-66	347 - 496	97	146 / 150	None	ABC02507
MLOC_29282.3	550	3e-66	188 - 337	97	146 / 150	None	ABC02507
MLOC_29282.2	577	1e-65	276 - 424	97	145 / 149	None	ABC02507