- Probe CUST_27472_PI390587928
- Source Contig U35_42743
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27472_PI390587928 | Hv_44K_v2 | CTATGGGAAAGACAATCTTTCCTGCAAAGAATGGTGGAAACCTCCAGGTTATGTTGATGG | 570 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.676 | 1.332 | 1.173 | 0.838 | 0.384 | 0.431 |
| Raw | 104.559 | 118.416 | 98.744 | 105.993 | 17.672 | 21.123 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358049 | 2345 | 7e-23 | 1558 - 1617 | 98 | 59 / 60 | plus | ABC02507 ABC02804 ABC02809 ABC02810 ABC02811 ABC42898 ABC50535 |
| MLOC | MLOC_77688.1 | 1081 | 7e-23 | 264 - 323 | 98 | 59 / 60 | plus | ABC02804 ABC02809 ABC02810 ABC02811 ABC50535 |
| MLOC | MLOC_77688.2 | 971 | 7e-23 | 264 - 323 | 98 | 59 / 60 | plus | ABC02804 ABC02809 ABC02810 ABC02811 ABC50535 |
| MLOC | MLOC_50640.1 | 467 | 7e-23 | 257 - 316 | 98 | 59 / 60 | plus | ABC02809 ABC02811 |
| MLOC | MLOC_50639.1 | 601 | 7e-23 | 257 - 316 | 98 | 59 / 60 | plus | ABC02809 ABC02811 |
| MLOC | MLOC_50639.2 | 821 | 7e-23 | 256 - 315 | 98 | 59 / 60 | plus | ABC02809 ABC02811 |
| JLOC1 | JLOC1_51794.2 | 396 | 4e-23 | 26 - 85 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_51794.1 | 165 | 4e-23 | 26 - 85 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_32310.3 | 824 | 4e-23 | 257 - 316 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_32310.2 | 601 | 4e-23 | 257 - 316 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_32310.1 | 467 | 4e-23 | 257 - 316 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC38607 | 743 | 3e-25 | 571 - 630 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02805 | 559 | 3e-25 | 218 - 277 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02811 | 684 | 1e-23 | 19 - 78 | 98 | 59 / 60 | plus | ABC02811 |
| Harvest21 | ABC02809 | 1033 | 2e-21 | 10 - 68 | 97 | 58 / 60 | plus | ABC02809 |
| Harvest35 | U35_42743 | 743 | 3e-25 | 571 - 630 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15145 | 604 | 3e-25 | 218 - 277 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15150 | 961 | 1e-23 | 175 - 234 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_15151 | 1152 | 2e-21 | 10 - 68 | 97 | 58 / 60 | plus |
Contig Sequence (743 bp)
>U35_42743 743 Hv_44K_v2 GCCCAGATCCCACCATTTTCTTCTCCAAGAGCTCGGACCAGCCACCCCCCGCGGTGATCT AATCCTCCTCCCAGATCCCCCATCTCCCGAGCGTGTCCCAGCATCCTCGTCCAGGATGCA TGCCAGCTCTTGTTTACGCACGGGAGTGTCCGTCGAGCGAAGTCGGCCATCTCCCGCATG CTCGACCCCGGCGGCGATCTGCAGCAGGGACTGGGCTCGATCCCGTTTCGATTCGATTCA GGGAGAGGTGCCAGATCCCGTCACCGCTGACTAAGGTTTTGCACATGGATAGAAATGACT ACTATGGAGGACATTCCACCTCCCTCAACTTGAACCAGCTCTGGAAGAAGTTTAGGGGGG AAGATAAACCACCGGCGCATTTAGGCGCTAGCAGAGACTACAATGTAGACATGGTTCCAA AGGATTTGCTAGCGGTGATCCAGAGAGAGATGGCAATGCAATCCGTATATTCCTTGAAGA TGGACACCAAATTGGATGTGCTCAGTCATATGCAAAGAACATGGGTCTTTATGGACAGAG AGCGGGATGTCTGAGCACGGAGCATTTAGTCTATGGGAAAGACAATCTTTCCTGCAAAGA ATGGTGGAAACCTCCAGGTTATGTTGATGGAAAGAGGAAAATAGACGCTGCAAATCCTGG TCCAGAAGATGCTGCCAAGCTTCTAAGCATCTCANGTGGCACCAGCAACAACGATTAAGC AGTATCAGTGCTATTCGAAAACC
Homology of Contig U35_42743 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |