barSeed - Barley Seed Development Database

Probe CUST_14185_PI390587928

Source Contig U35_41989

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14185_PI390587928	Hv_44K_v2	GAGGTCCATAGTATGTTTAGCCTTTGAAGACAATGTCGTTTCGTCCGGTATTTTTACTTT	64	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.235	0.390	0.933	1.870	0.977	1.812
Raw	25.002	69.122	140.270	469.760	77.896	160.853

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369624	1696	2e-24	1612 - 1671	100	60 / 60	plus	ABC02506 ABC02507 ABC17153 ABC37332
MLOC	MLOC_10561.1	1488	7e-23	21 - 80	98	59 / 60	minus	ABC02506 ABC02507 ABC17153 ABC37332
JLOC1	JLOC1_6912.2	1497	4e-23	1423 - 1482	98	59 / 60	plus
JLOC1	JLOC1_6912.1	1407	4e-23	1333 - 1392	98	59 / 60	plus
Harvest21	ABC37332	638	3e-25	65 - 124	100	60 / 60	minus	ABC37332
Harvest35	U35_41989	638	3e-25	65 - 124	100	60 / 60	minus

Contig Sequence (638 bp)

>U35_41989 638 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAACCAAAAAACAACATCTATTGTTCTGTTGCATCTTATCAAA
ATTTAAAGTAAAAATACCGGACGAAACGACATTGTCTTCAAAGGCTAAACATACTATGGA
CCTCCCAATAGAAAATTTAGGAACTTAGAATATACATCATACAGCTTTATCGACTATAGC
TCAGCTATTACATTTCAAAATAATGAGTGCAAAGGTGGACCTACGATGAACTGCAAAACA
AAGCATAAATCGTTTCCAAAATGCAAGATATAGCTGCCCTAGAATTGTCAATCATCTTCG
GCAGCACTTGCAGCGCTTAGATCCACACTGAGGTCGACCGTCTTTCCGGTGATCTTTGTG
TACAGCGAAAGAACATCCATCACGGTAGATTCAAAGTGTGTTGTGGCATCGTAACTCGTT
GATATAAAACAATTGTCAGAAGATGGGTCATTAGCAGGTTCATATCTGTCATATGTGTCG
AAAAATAACTCATCAACAGGCCCTAGAAGATCGATTCCTGGCTTCAGTTCTGCCTCTGGA
TTGTCACTCTCTGCTTGTGCTGACACAAACGCTATGAACTTTCCCTTCGACGCAACATTG
TGAGAGTAGGAACAGCAGAAAACATACATGTCTGATCT

Homology of Contig U35_41989 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g16970.1	447	1e-59	protein\|rab GDP dissociation inhibitor alpha, putative, expressed
Brachypodium v1_2	Bradi1g53020.1	447	9e-61
Arabidopsis v10	AT3G59920.1	444	4e-52	\| Symbols: ATGDI2, GDI2 \| RAB GDP dissociation inhibitor 2 \| chr3:22135157-22138221 FORWARD LENGTH=444