barSeed - Barley Seed Development Database

Probe ABC02506

Source Contig ABC02506

barSeed

Links

Affymetrix Source Sequence (1834 bp)

>ABC02506 1834
GCTGACCGAGTGCCCTCTCATGCGCACGCATCCGACTTCTTCCGGATTCCCGAACGCCCC
AACTGCTGCCCTTTCGTCAACTCCACTTCTCTCCACCCGGCGCCCCTTGCTCCCCGGAAC
CACCGCGACAAGCTCGCTGCGCCGCCGCCATGGATGAGGAGTACGACGTCATCGTGCTGG
GCACGGGGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGGTTT
TGCACATGGATAGAAATGACTATTATGGTGGAGATTCCACTTCTCTCAACCTTAATCAGC
TCTGGAAGAAATTTAGAGGGGAAGACAAGCCCCCGGCACATCTAGGCTCAAGCAAAGATT
ACAACGTAGACATGGTTCCAAAGTTTATGATGGCAAATGGGACATTGGTTCGAACCCTCA
TTCACACTGATGTAACGAAGTATTTGTCATTCAAAGCTGTTGATGGTAGCTTTGTCTTCA
GCAAAGGGAAGATCCACAAGGTTCCCGCGACTGATATGGAGGCTGTGAAGTCTCCTTTGA
TGGGCCTTTTTGAGAAACGCAGAGCAAGGAACTTCTTCATTTATGTCCAAAATTACGATG
AAGCTGATCCAAAAACACATCAGGGATTGGACCTTACTACGTTGACAACTAAAGAGTTGA
TAGCAAAGCACGGCTTAAGTGATGATACAGTGGATTTCATTGGCCATGCGCTTGCTCTCC
ATAGGGATGATCGCCACCTCAATGAACCAGCACTTGATACTGTGAAAAGGATGAAATTAT
ATTCGGAGTCTCTTGCACGTTTTCAAGGGGGCTCACCTTATATTTATCCTCTATATGGGC
TGGGTGAGCTGCCACAGGGTTTTGCACGTCTAAGTGCTGTTTATGGTGGTACTTACATGC
TATGTAAGCCAGAATGCAAGGTTGAATTCGATATGGAAGGAAAAGCGTGTGGTGTTACAT
CAGAAGGTGAAACCGCAAAATGCAAGAAAGTTGTCTGTGATCCTTCGTACTTGACCAACA
AGGTCAGAAAGATCGGCAAAGTTGCACGTGCAATTGCTATTATGAGCCATCCAATCCCAA
ATACAAATGAGTCCCACTCAGTCCAGATTATTTTGCCACAGAAACAACTTGGACGCAATT
CAGACATGTATGTCTTCTGTTGCTCATACACCCACAACGTCGCACCAAAAGGGAAGTTCA
TTGCATTCGTCTCTGCAGAAGCGGAGAGTGATAATATACAATCCGAACTCAAGCCTGGCA
TTGATCTACTTGGTCCAGTGGATGAGCTCTTTTTTGATATGTATGACAGATATGAACCAG
TGAACGAACCATCTCTTGATAATTGCTTCATCTCAACGAGCTATGATGCTACCACACATT
TTGAGACAACTGTGACAGACGTTCTTAACATGTATACAATGATCACCGGAAAGGCTATTG
ATCTCACCGTTGATTTGAGTGCTGCTAGTGCTGCTGAAGAAGAATACTAGATTTCATAAT
TAAAAAAAAACGGCTATTCTCTTCAAACACCGCAGGACAAACCATAACAAACGTCCTGAC
TATTTCGCCCGCGGATCAAATTTGGTGTTATGGCCAGTGTCTTCCGCATGCCTGTCGCTT
GCAGCAAATATGGGAAAAAAATGTTGGTTCCAGACGATTGAACTATGGTGGTTTTATTTA
CTACTGTATACTAGAGTAATTAGTGAATGTTGTGAACAGTGAACAGGGTTGGCTATGAAC
TTTGTGGCTTTATGTATGTATCATAATAACTGTTAAAGTAAGTTTACAAGTCTGGCTACG
AACAGGGTTGATATTCCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK369742	1785	0.0	4 - 1770	100	1767 / 1767	CUST_6636_PI390587928	ABC02506 ABC02507 ABC17153
MLOC_12434.1	1413	0.0	21 - 1176	99	1151 / 1156	CUST_6636_PI390587928	ABC02506 ABC02507
AK359796	1270	0.0	273 - 1270	100	998 / 998	CUST_6636_PI390587928	ABC02506 ABC02507
MLOC_12434.2	1451	5e-94	987 - 1180	99	192 / 194	CUST_6636_PI390587928	ABC02506 ABC02507
AK361995	1725	0.0	91 - 1440	88	1185 / 1353	None	ABC02506 ABC02507 ABC17153
MLOC_55039.6	1751	0.0	71 - 1330	87	1098 / 1263	None	ABC02506 ABC02507 ABC17153
MLOC_55039.4	1287	0.0	44 - 1287	86	1078 / 1247	None	ABC02506 ABC02507 ABC17153
MLOC_16225.1	712	0.0	140 - 712	100	573 / 573	None	ABC02506 ABC02507 ABC17153
AK369624	1696	0.0	112 - 1441	78	1042 / 1334	CUST_38086_PI390587928 CUST_14185_PI390587928	ABC02506 ABC02507 ABC17153 ABC37332
MLOC_55039.3	1894	5e-174	150 - 728	86	500 / 583	None	ABC02506 ABC02507 ABC17153
MLOC_55039.2	2096	1e-179	1109 - 1654	88	478 / 546	None	ABC02506 ABC02507 ABC17153
MLOC_55039.5	1343	5e-174	71 - 649	86	500 / 583	None	ABC02506 ABC02507 ABC17153
MLOC_55039.7	1190	1e-154	1 - 480	87	420 / 481	None	ABC02506 ABC02507
MLOC_10561.1	1488	0.0	251 - 1401	77	887 / 1153	CUST_38086_PI390587928 CUST_14185_PI390587928	ABC02506 ABC02507 ABC17153 ABC37332
MLOC_55039.1	1233	5e-174	213 - 791	86	500 / 583	None	ABC02506 ABC02507
MLOC_10561.2	887	1e-90	208 - 800	77	456 / 593	CUST_38086_PI390587928	ABC02506 ABC02507 ABC17153
AK365759	750	3e-86	91 - 330	91	218 / 240	None	ABC02506 ABC02507 ABC17153