barSeed - Barley Seed Development Database

Probe ABC02384

Source Contig ABC02384

barSeed

Links

Affymetrix Source Sequence (1471 bp)

>ABC02384 1471
GCATCTCGGTGACCTCACCGCTACAGTGCACTGGTGGCGGCGGCGGGCAGGGGAGGGAAG
ATGGCACCGCCGCGGCGCGTGTGCGTCACCGGCGGCGGCGGGTTCATCGCCTCGTGGCTC
GTCAAGCTGCTCCTCTCCCGCGGCTACGCCGTCAACGCCACCGTCCGCGACCCAAGTGAC
CCCAAGAATGTCCACCTCAAGCAGATGGACGAGGCCCGGGAGAATCTGCACTTGTTCAGG
GCCGACGTGCTCGACTACGACACGCTGACACGTGCGTTTGAGGGGTGTGAGGGGGTCTTC
CACCTCGCCACTCCGGTGCCTGAAGATAAGATTGTTGATCCTGAGTCAGAAGTATTGGCT
CCTGCTGTGAAAGGTACTTCAAATGTGCTAAAGGCTTGCTCGGCTATGAAGGTTCAGAAG
GTTATTGTCTTGTCATCCACTGCTGCAGTTGATTTCAACCCGAATTGGCCTCAAGATAAA
CTTAAAGATGAGAGTTGCTGGTCAGACAAAGACTTCTGCCAGAAGAACGAGGACTGGTAT
TCTGTTGCTAAGATTGTGGCCGAACAGGCATCCTTTGAATATTCGGAGAAGAATGGATTA
AATGTTGTTACGGTTTGCCCTCCTTTGGTTTTTGGTCCATTGTTGCAGCCTACTGTGAAT
ACAAGTAGCAAATTCTTAATCTACGTTACTAACGGAGGCCCTGACGTGATGAGCAACAAG
CTGTGGCACATTGTAGACGTCCGCGATGTGGCTGACGCCTTGCTGCTTGTGTACGAGAAG
GCAGAATCGTATGGGAGATACATCTGCACGCCGAACAACATCTGCACAACGGACTTGGTG
GACTTGCTGAAGAAGATGCACCCACAGTACAGCTATGTGAACAACATCGTCGACGTGGAC
CGTAAGGCGCCGATATCGTCGCAGAAGCTGAAGGATCTGGGGTGGAAGCCGCGGAAGCTG
GAGGAGACGCTCTCGGACAGCGTGGACTGTTATGAGAAGGCTGGACTTCTGCAGGGTTCC
GCTGCGCGTCCTTGCCGGCTTCCGCATCTGTTCCGTCTGGCTGGTGATCAGTGAATCAGA
AGTGCTGACGGTGCTTCGTTTTTTATGGTCGGACTTCTGGATGGAGTCTCGCAACGGCAA
CAAATAAGCAGCTATCGCTCTGCAGCTCTGTATCTGCCGTATCCCTGCTGTACCTGCCGG
CACCCCGTCTGTCACCTCTAAGAATGGACAGAGGGTACAACATGCAGAGCACAAGCGGAA
TGCCGATGCATATAAACTGTCAAAAGAGACAAGGTACTCTGCCACTTACTGGCTGTCACG
GTTAGTGGAGGGAGATTTCCTTCCGTTTTCCTAATCGCTAGCCTTTTGCTGCGATGAGCT
AAAAGGCTGTATTAGTACCATCAGGCAGCGCTACAGCTAGATTAGAAGAATCGCAATGAA
ATACGCTCCCTGTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK356922	1406	0.0	55 - 1406	100	1352 / 1352	None	ABC02384 ABC08979 ABC11338 ABC43764
MLOC_16458.1	1443	0.0	67 - 1350	100	1284 / 1284	CUST_27690_PI390587928 CUST_430_PI415269222	ABC02384 ABC43764
MLOC_16458.2	1327	0.0	1 - 1199	100	1199 / 1199	None	ABC02384 ABC43764
AK360878	1316	1e-129	1 - 804	77	627 / 811	None	ABC02384 ABC08979 ABC11338
AK370330	1293	2e-127	62 - 891	77	639 / 833	CUST_12641_PI390587928	ABC02384 ABC08979 ABC11338 ABC24449
AK370761	1334	2e-117	72 - 1059	75	744 / 996	None	ABC02384 ABC08979 ABC11338
AK372877	1296	9e-116	44 - 795	77	582 / 757	None	ABC02384 ABC08979 ABC11338
MLOC_28841.1	243	5e-108	1 - 231	97	225 / 231	None	ABC02384
MLOC_61924.1	1482	1e-104	565 - 1307	76	572 / 750	CUST_16945_PI390587928 CUST_429_PI415269222	ABC02384 ABC08979 ABC11338
MLOC_28841.2	493	2e-93	1 - 202	98	197 / 202	None	ABC02384
MLOC_28841.3	520	6e-93	1 - 207	97	201 / 208	None	ABC02384
MLOC_52580.1	267	6e-78	62 - 235	97	169 / 174	None	ABC02384
MLOC_69024.1	525	4e-64	4 - 290	82	236 / 287	None	ABC02384 ABC08979 ABC11338
MLOC_41789.1	271	8e-57	16 - 271	82	212 / 257	None	ABC02384 ABC08979 ABC11338
AK248951.1	1079	4e-55	64 - 328	82	217 / 266	CUST_22652_PI390587928	ABC02384 ABC25624
MLOC_16449.1	384	1e-54	130 - 384	82	210 / 256	None	ABC02384 ABC08979 ABC11338
MLOC_81199.1	163	2e-52	1 - 113	100	113 / 113	None	ABC02384