barSeed - Barley Seed Development Database

Probe CUST_12641_PI390587928

Source Contig U35_5010

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12641_PI390587928	Hv_44K_v2	TCTAGTTATGTCATTGTGCTTGTAACTGCGGAACATGCATTGGAGTTCCCAGGTACCACA	1094	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.775	4.596	1.136	0.708	0.612	0.545
Raw	64.231	84.379	17.442	18.534	3.548	3.487

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370330	1293	2e-24	1129 - 1188	100	60 / 60	plus	ABC02384 ABC08979 ABC11338 ABC24449
MLOC	MLOC_73322.1	2515	2e-24	2401 - 2460	100	60 / 60	plus	ABC11338 ABC24449
MLOC	MLOC_73322.2	2280	2e-24	2086 - 2145	100	60 / 60	plus	ABC11338 ABC24449
MLOC	MLOC_73322.4	1115	2e-24	889 - 948	100	60 / 60	plus	ABC11338 ABC24449
MLOC	MLOC_73322.3	1334	2e-24	1140 - 1199	100	60 / 60	plus	ABC11338 ABC24449
JLOC1	JLOC1_48814.2	2056	8e-25	1718 - 1777	100	60 / 60	plus
JLOC1	JLOC1_48814.1	1333	8e-25	995 - 1054	100	60 / 60	plus
Harvest21	ABC11338	1246	3e-25	1095 - 1154	100	60 / 60	plus	ABC11338
Harvest35	U35_5010	1246	3e-25	1095 - 1154	100	60 / 60	plus

Contig Sequence (1246 bp)

>U35_5010 1246 Hv_44K_v2
AGTTGACTCAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGATGGAACCGCCGCGACACGTG
TGCGTGACCGGCGGCGGCGGGTTCATCGCCTCGTGGCTCGTCAAGCTGCTCCTCTCCCGG
GGCTACGCCGTCCACGCCACCGTCCGCGACCCCAGTGACCAGAAGAACGCGCATCTGATG
CAGCTGGACGGGGCGGCGGAGAACCTGCGTCTGTTCAAGGCCGACGTGCTCGACAGCGCC
GCGCTGGCCGCCGCCGTCGAGGGGTGCGAGGGCGTCTTCCATGTCGCCTCCCCCGTCCCT
GCGGATAAGATCCTCGATCCTGAGTCAGAAGTCATGGTGCCTGCCGTGAAGGGAACCTTA
AATACTCTTGAAGTTTGCTCATCTCTGAAGGTTCAGAAGGTTGTGGTGGTGTCATCCACT
GCTGCTGTTCGTTATAACCCCAACTGGCCTCTGGGTAAACCCAAAGACGAGAGTTGCTGG
TCGGACAGAAAAGTATGCAAGGACAATGAGATCTGGTATTGTCTTGCTAAAACTGTTGCT
GAACAGACAGTTTGGGAATATGCAGAGAAGAACGAGCTAAATGCTGTTACAGTATGCCCT
TGTATTGTTTTGGGGCCACAATTGCAACGTGTTGTCAATACTACAAGCGAACTCCTCCTC
TATGTCATAAAAGGAGGTCCTAATGTGTTGAATGACATGCTGTGGCACATAGTCGATGTC
CGTGATGTGGCCGATGCCCTGCTTCTAGTATACGAGAAACCAGAATCATCCGGAAGATAT
ATCTGCGCACCAAATTATATTAGCACAAACGCTATGTTGGAGTTGCTAAAGAAGACGTAC
CCTGACTACAACTATGTAAAGTGCAAGGCTGATGTGCATCAGAACTCTCCTACCACGCTG
ATCACGTCAGGAAAATTGAATGATCTGGGCTGGAAGCCGAGGGCATTGGAGGAGACGCTA
CTGGACAGCATCGATTATTACCGGAAGACAGGAATTCTGCAGGATGGGGAGGGACAGACC
TACCGCCTCCCTGATATTTTCCGTCGTTTTCAAGCTGCCGAGGAATGAGTCAAGAGCGGC
AGTGGCCAGTGCTTTCTAGTTATGTCATTGTGCTTGTAACTGCGGAACATGCATTGGAGT
TCCCAGGTACCACACGCCCCTATATGAATATAGCATAAAAAAAAACCAGGAAATGTAAAA
AAATTCTAAAACTTTGGATATCATATCTGGGTGCCAATTGTACACC

Homology of Contig U35_5010 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31502.1	349	2e-146	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi4g33886.1	342	1e-173
Arabidopsis v10	AT2G33590.1	321	6e-89	NAD(P)-binding Rossmann-fold superfamily protein \| chr2:14224622-14226365 FORWARD LENGTH=321