barSeed - Barley Seed Development Database

Probe ABC02110

Source Contig ABC02110

barSeed

Links

Affymetrix Source Sequence (1521 bp)

>ABC02110 1521
GGCTGCAGGAATTGGCACGAGGAAGCAGTAAAAATGATAGAAGATTTAACAGGGAGGGGC
AAGAACAAGAAAAAAATTCACATTGAGGGGGATATGACAAAACAACACGCCATGGAGGTG
GTGTTGAATCAGCAGGTCAAGGAGCGTCAGGAGATGGAAAAGAAACTGGCGAAGCTTGCA
AAGACAATGGATCACTTGGAGAGGGCAAAACGGCAGGAGGAAGCACCACTAATCGAGGAG
GCCTTCCAGAAACGCCTCGAGGAAGAAAAGATCCTCCACGAGCAAGAGCAGCTGAGAGAG
ATTGAGCTCAGCAAGCAACACCATGCGGGTGACTTGCAGGAGAAAAATAGGCTTTCTCGA
TTGTTGGAGCATAAGAATGCTTTCCAGGAAAGAATTGTCCAACGTCGTGAATCTGAGTTT
AGTAGCCTAAGGAAAGAGAGGGAAGAAAGGATTAATCACTTGCTATCTTCAAGAAAGCGT
GAAAGGGAGACTGTACGCAAATTGATGTATTTTCTGAACATGGAGGAACAGCGGATCCAA
AGGGTTCGTGAGGAAGAGGAGGCTAGAAAGCGTGAAGAGGAAGAGAGGAGGAAGAAGGAG
GAAGCTGAGAGGAAGCTCAAGCTTGACGCAATCGCAGCTAAGCAGCTGCAGAGGGAGAGG
GAGTTGGAAGAGAGGGAAAAACAGAGAAGGGAGGCTCTCCTAAGAGGAGCAGAGCCCGTG
CGCACAGCTGATGCACCAGCTGCTGCTGCTGTCGCACCGCCAGCCCGTGAACCAGCAGCG
GCTGCTCCAGCTGCAGCAGCTGCCGCAGCTGGTGCTTCTCCTAGCAAGTATGTCCCCAAA
TGGAAACGTGAGGGTGACAGTAGCAGTCAGAGGACGGCTGTTGCAGCTGAAACAGACCGG
TGGGGGCGTGATGATCGTCCTCGCCCTGCTCCCCGCCAGGAAGCTCCTCCTCTGCGTGAT
GCTCGTCCCCTCCGCCAAGATGCCCCTCCTGCACGTGATGTCCGCCCCTTCCGCCAGGAG
GCTCCTCCCGCCGCACGTCAAGAGGCGCCCCCTGCCCGCCAGCCGGACGGTGCTGCTCCA
GCTGCGTCTACTGAACGCTGGCGTCCTGGATCTAGGACCTCTGCAAATTCTTCATCCAAC
TCCTCTTCCACTGGCTGGAGGCGCTGAAGCTTCCTGGCCTGAAATGCGCCGTGCTCTTCC
TGCCTGCTGGCTGAGATTTTTGCCGTCCTCCTTCCAAGCCTGGGAGCTTCATACACAATT
GAAGGTCTGCCACTGGTATCTGGAAGCACGGTTACTTGAATTTGCTTGTTGCGCACCTAA
ATTTTCGAATGGAGACTTTGTACTATTTCTCAGTTATGTTTGATGTTTTGAGAGTCACAG
TACTCATGCATAATGTGTTGCCCTTTGTTGTCGTATATTCCTGACTATGCTGTTAGTTTG
TCGAGTATGCATAATGAAAGGTACCTCTGAATTTGAGCTCGTCATACATACGTATAAATT
TCCTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_62056.2	3596	0.0	2199 - 3596	99	1387 / 1398	CUST_8202_PI390587928 CUST_16236_PI390587928 CUST_21203_PI390587928	ABC02110 ABC11880 ABC32694 ABC37589 ABC49886
AK375084	866	0.0	1 - 866	99	863 / 866	None	ABC02110 ABC37589 ABC49886
MLOC_62056.1	953	0.0	158 - 953	99	792 / 796	CUST_21204_PI390587928	ABC02110 ABC37589 ABC49886
MLOC_62056.3	2438	0.0	1 - 476	98	467 / 476	CUST_8202_PI390587928 CUST_16236_PI390587928 CUST_21203_PI390587928	ABC02110 ABC11880
MLOC_62056.4	2569	0.0	1 - 474	98	465 / 474	CUST_8202_PI390587928 CUST_16236_PI390587928 CUST_21203_PI390587928	ABC02110 ABC11880
MLOC_59709.1	3463	0.0	2071 - 2750	87	602 / 693	CUST_21203_PI390587928 CUST_32190_PI390587928 CUST_31329_PI390587928	ABC02110 ABC11880 ABC48910
MLOC_59709.4	394	9e-126	8 - 387	88	338 / 383	CUST_21203_PI390587928 CUST_31329_PI390587928	ABC02110