- Probe CUST_21203_PI390587928
- Source Contig U35_14856
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21203_PI390587928 | Hv_44K_v2 | CGATTGTTGGAGCATAAGAATGCTTTCCAGGAAAGAATTGTCCAACGTCGTGAATCTGAG | 357 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.869 | 1.441 | 1.076 | 0.681 | 0.399 | 0.330 |
| Raw | 3885.663 | 4431.100 | 3038.670 | 2823.390 | 616.285 | 564.265 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_62056.2 | 3596 | 7e-23 | 2540 - 2599 | 98 | 59 / 60 | plus | ABC02110 ABC11880 ABC32694 ABC37589 ABC49886 |
| MLOC | MLOC_62056.3 | 2438 | 7e-23 | 76 - 135 | 98 | 59 / 60 | minus | ABC02110 ABC11880 |
| MLOC | MLOC_62056.4 | 2569 | 7e-23 | 74 - 133 | 98 | 59 / 60 | minus | ABC02110 ABC11880 |
| MLOC | MLOC_59709.4 | 394 | 3e-21 | 72 - 131 | 97 | 58 / 60 | plus | ABC02110 |
| MLOC | MLOC_59709.1 | 3463 | 3e-21 | 2356 - 2415 | 97 | 58 / 60 | plus | ABC02110 ABC11880 ABC48910 |
| JLOC1 | JLOC1_40592.2 | 3662 | 4e-23 | 2458 - 2517 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_40592.1 | 3468 | 4e-23 | 2264 - 2323 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_38871.1 | 3453 | 2e-21 | 2356 - 2415 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC02110 | 1521 | 3e-25 | 358 - 417 | 100 | 60 / 60 | plus | ABC02110 |
| Harvest21 | ABC34217 | 699 | 1e-23 | 414 - 473 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC02107 | 895 | 1e-23 | 280 - 339 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC35418 | 610 | 6e-22 | 433 - 492 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_14856 | 973 | 3e-25 | 358 - 417 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38306 | 699 | 1e-23 | 414 - 473 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_39328 | 610 | 6e-22 | 433 - 492 | 97 | 58 / 60 | plus |
Contig Sequence (973 bp)
>U35_14856 973 Hv_44K_v2 GGCTGCAGGAATTGGCACGAGGAAGCAGTAAAAATGATAGAAGATTTAACAGGGAGGGGC AAGAACAAGAAAAAAATTCACATTGAGGGGGATATGACAAAACAACACGCCATGGAGGTG GTGTTGAATCAGCAGGTCAAGGAGCGTCAGGAGATGGAAAAGAAACTGGCGAAGCTTGCA AAGACAATGGATCACTTGGAGAGGGCAAAACGGCAGGAGGAAGCACCACTAATCGAGGAG GCCTTCCAGAAACGCCTCGAGGAAGAAAAGATCCTCCACGAGCAAGAGCAGCTGAGAGAG ATTGAGCTCAGCAAGCAACACCATGCGGGTGACTTGCAGGAGAAAAATAGGCTTTCTCGA TTGTTGGAGCATAAGAATGCTTTCCAGGAAAGAATTGTCCAACGTCGTGAATCTGAGTTT AGTAGCCTAAGGAAAGAGAGGGAAGAAAGGATTAATCACTTGCTATCTTCAAGAAAGCGT GAAAGGGAGACTGTACGCAAATTGATGTATTTTCTGAACATGGAGGAACAGCGGATCCAA AGGGTTCGTGAGGAAGAGGAGGCTAGAAAGCGTGAAGAGGAAGAGAGGAGGAAGAAGGAG GAAGCTGAGAGGAAGCTCAAGCTTGACGCAATCGCAGCTAAGCAGCTGCAGAGGGAGAGG GAGTTGGAAGAGAGGGAAAAACAGAGAAGGGAGGCTCTCCTAAGAGGAGCAGAGCCCGTG CGCACAGCTGCCGCAGCTGGTGCTTCTCCTAGCAAGTATGTCCCCAAATGGAAACGTGAG GGTGACAGTAGCAGTCAGAGGACGGCTGTTGCAGCTGAAACAGACCGGTGGGGGCGTGAT GATCGTCCTCGCCCTGCTCCCCGCCAGGAAGCTCCTCCTCTGCGTGATGCTCGTCCCCTC CGCCAAGATGCCCCTCCTGCACGTGATGTCCGCCCCTTCCGCCAGGAGGCTCCTCCCGCC GCACGTCAAGAGG
Homology of Contig U35_14856 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g03070.2 | 985 | 2e-87 | protein|transposon protein, putative, unclassified, expressed |
| Brachypodium v1_2 | Bradi2g01550.1 | 984 | 2e-98 | |
| Arabidopsis v10 | None |