barSeed - Barley Seed Development Database

Probe CUST_8202_PI390587928

Source Contig U35_5343

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8202_PI390587928	Hv_44K_v2	AAGACTCCTTGCGAGAAAATCAATTATTGAAAAACGTAAAGAAGACCATGAGCGTCAAAT	852	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.357	1.424	1.219	0.801	0.391	0.345
Raw	3793.180	5960.743	4671.990	4545.033	832.841	784.923

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62056.2	3596	2e-24	1999 - 2058	100	60 / 60	plus	ABC02110 ABC11880 ABC32694 ABC37589 ABC49886
MLOC	MLOC_62056.3	2438	2e-24	617 - 676	100	60 / 60	minus	ABC02110 ABC11880
MLOC	MLOC_62056.4	2569	2e-24	615 - 674	100	60 / 60	minus	ABC02110 ABC11880
JLOC1	JLOC1_40592.2	3662	8e-25	1917 - 1976	100	60 / 60	plus
JLOC1	JLOC1_40592.1	3468	8e-25	1723 - 1782	100	60 / 60	plus
Harvest21	ABC11880	912	3e-25	853 - 912	100	60 / 60	plus	ABC11880
Harvest35	U35_5343	912	3e-25	853 - 912	100	60 / 60	plus

Contig Sequence (912 bp)

>U35_5343 912 Hv_44K_v2
CAAACTGACTGAAATATTCTGGATATCTGAGAGTCACTTGTATCATGCATATGCATGGCT
GAAGCTTTTCAACTTGCAGAAGAGCTACAACAAGAATTTAACTCAGAAGGATCTCCAATT
GCTAGCATCTTCTGTTTTGCTTGCTGCACTTTCTGTTACACCATATGACCATAAATATGG
TGCATCTCATCTTGAGCTTGAAAATGAAAAGGACCGTAGCTTGCGTATGGCCAACCTTGT
CAATTTCTCCCTTGACTCCAAGCGCGAGAATAGAGAAATGGTTTCAAGAGCAACTCTTCT
TTCTGAGTTGGCTGCCAAAGGTGTGATTTCATGTGCTTCCCAAGAAGTAAAAGATCTATA
CAACCTTATGGAGCATGAGTTCCTTCCTCTGGACCTAGCATCAAAAGTACAGCCTCTGCT
TTCCAAGATTTCTACGATTGGAGGAAAGCTTTCAGCTGCATCTTCAGTTCCGGAAATTCG
TTTATCACAGTACCAATCTGCACTGGAGAAGCTTACTGCACTGAGGGTGCTGCAGCAGGC
ATCTCGTATTTTCCAGTCTATGAAAATTGATATGCTATCTAGAATGATCCCATTCTTTGA
CTTCAATGTCGTGGAGAAGATCGCTGTTGATGCTGTCAAGCACAATTTTGTTGCTATGAA
AGTTAACCATTTGGCAGGAGCTGTTCATTTTGGCAACATGGACATAGAATCTGATGTGCT
TAGTAGTCACCTTAGTGTCCTTGCTGATTCCCTGAACAAAGCAAGGAGTCTTATTCATCC
ACCTGTGTATAAGCCATCCAAACCTAGTGAAAACTTGGCCAGTCTTCCTGGAGTGGTGGA
GAAAGAACATAGAAGACTCCTTGCGAGAAAATCAATTATTGAAAAACGTAAAGAAGACCA
TGAGCGTCAAAT

Homology of Contig U35_5343 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03070.2	985	2e-161	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi2g01550.1	984	1e-167
Arabidopsis v10	AT4G11420.1	987	4e-123	\| Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 \| eukaryotic translation initiation factor 3A \| chr4:6947834-6952053 REVERSE LENGTH=987