barSeed - Barley Seed Development Database

Probe CUST_31329_PI390587928

Source Contig U35_39328

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31329_PI390587928	Hv_44K_v2	AGCGTGAAAGGGAGATTGTAAGGAAATTGATGCATTACCTGAACATGGAGGAACAACGGA	550	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.744	2.346	1.312	0.691	0.319	0.341
Raw	892.730	1216.037	585.237	462.030	77.543	93.220

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59709.4	394	2e-24	190 - 249	100	60 / 60	plus	ABC02110
MLOC	MLOC_59709.1	3463	2e-24	2474 - 2533	100	60 / 60	plus	ABC02110 ABC11880 ABC48910
JLOC1	JLOC1_38871.1	3453	8e-25	2474 - 2533	100	60 / 60	plus
Harvest21	ABC35418	610	3e-25	551 - 610	100	60 / 60	plus
Harvest35	U35_39328	610	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_39328 610 Hv_44K_v2
AGGGCTGCAGACGAAGAAAGGGAGAGGCTTTTGAAGGACCAGAGACTCAGGGAGCAGCAG
AGGATCAGTCGAGAAATAAAGGAAAAAGAGCGCCTGGAAGCAGAAAAAATAATAAATGAT
TTGAAAAAAGTAATTAAGAATGGGGGCAAAATTCACATTGAGGGGGATATGACAAAACAA
TTCGCCATGGAGGTGGTACGGAGTCAACGGGTGAAGGAGTTTGAAGAGATGGAAAAAAAA
CTGCAGAAGCTTGCAAAGAAAATGGATCACTTGGAGAGGGCAAAACGGCAGGAGGAAGCA
CCACTGATTGAGGAGGCCTTCCGAAAGCGCCTTGAGGAAGAAAAGATCCTTCATGAGCAT
GAGCAGCTGAGAGAGATTGAGCTCAGCAAGCAACACCACACGGGTGACTTGGAGGAGAAA
AATAGGCTTTCTCGATTGTTGGAGCATAAGAATGCTTTCCAGGAAAGAATTGTCCAACGC
CGTGAAGCTGAGTATAGTAGCCTCAGGAAAGAGAGGGAAGAAAGGATTAATCAGTTGATA
TCTTCAAGAAAGCGTGAAAGGGAGATTGTAAGGAAATTGATGCATTACCTGAACATGGAG
GAACAACGGA

Homology of Contig U35_39328 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03070.2	985	4e-85	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi2g01550.1	984	2e-92
Arabidopsis v10	AT4G11420.1	987	2e-57	\| Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 \| eukaryotic translation initiation factor 3A \| chr4:6947834-6952053 REVERSE LENGTH=987