barSeed - Barley Seed Development Database

Probe ABC01302

Source Contig ABC01302

barSeed

Links

Affymetrix Source Sequence (1394 bp)

>ABC01302 1394
ATTTTGAGCGAATTTTATCTTAACATGCTTTAAATCTGTGTCATGGTTCTTTGTGATTTG
ATATGACTGCTTGTTATGTTTTGTGGCCTTAACTCTACGCTCCTGTTACATTAGCAATAC
TGTCATCAGCTTTCACATTAACTACCTTCTTAGCATGATAACTTATTATGTGTACCAAAC
AAGTGATAGTGTAGCTTCTGAATTATCCTGTTTTGGCACGATATGTTATTGTGCCATGCT
GGTTTCTGCATTGCATTTCTTTTAATATACCCTACCATTGATCTGTTTTTTCATCACCTA
TTATTTCCTTAATAATACACCGAATTGCTGAAGACTACCATAAAACGAGCAGCTGATGAT
CATTTAGTGGACGTTTTGTTAACTGCATACTAAACCTGATGTTTAACTAAATAGTAAATA
TTCCGGTGATTACTATTGTAGGTGGCACTTAACTGTATATTCCCATTTGCATCTACAGTT
TAGTTCTTCTAATATTCACATGTTTTTGTTGTTCTGCTGCACGCTGTTAGCAATGTGAAC
TCCATTATTGCACCCGCTTTGATCGGCAAGGTCCCTACCGCTCAAACTGATCTCGACAAC
TTTATGGTTCAGCAGCTTCCTCTCCTAACCCTCACTGCCGCCTCGTCCTCCTTCCCTCCC
TCTTCTTCTATTCCTCTTCGGCGGCGGCTTCAGACAGACCTCGCTAGCTAGGGTTTCGGG
CGGCGGAAGGAAGGAAGTCGGAAGGAAGATGAGCCGCAGCCTGGGTATCCCGGTGAAGCT
GCTGCACGGGGCGGCGGGGCATGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTCTACCG
GGGCTCCATGATTGAGTGCGAGGACAACTGGAACTGCCAGATCGAGAACATCACATTCAC
AGCAAAGGTACCAATCCCTCTCTTCATCTCCTCCTCCCCCTCATCTCCATCTCGTGGATG
CCTAGCAAGGTGTCGCAGCTGGAGCACGTCTTCATCATGGGCAGCAGGGTCCGGTTCATG
ATCATCTCCGACATGCTCAAGAACGCGCCCATGGTCAAGCTCCTAGAGGCCAGGATAAGG
GGCAAGGGGTCGGCCATCGGTGTAGGGCGCGGCCGCGCTCTCGCCATGCGTGCCATGAGT
GTGCTGATTGAGCCAACCAGTGGCAACACAGACATTGGGCTGGCCTTCATGGCTGCTGCC
AAGGGTTACAGACTTGTACTCACGATGCCCGCCTCCATGAGTATGGAGAGGAGAATCATC
CTGAAGGCTTTTGGTGCTGAGCTAATCCTCACAGACCCACTTTTGGGAATGAAAGGAGCT
ATATCATTCAAAAGTTGTATTGAGCAGTTTTTACAATGTACACCACCCTAATTAAATTTC
TCCGGGTAGAGGCA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK358922	2032	0.0	609 - 2017	99	1392 / 1409	CUST_8982_PI390587928	ABC01285 ABC01287 ABC01302 ABC02379
AK354728	2811	5e-128	1820 - 2078	99	256 / 259	CUST_8982_PI390587928 CUST_38102_PI390587928 CUST_37287_PI390587928	ABC01285 ABC01287 ABC01302 ABC02379
MLOC_30707.4	1000	0.0	47 - 1000	100	954 / 954	CUST_8982_PI390587928	ABC01287 ABC01302
MLOC_30707.2	1076	0.0	127 - 1076	100	950 / 950	CUST_8982_PI390587928	ABC01287 ABC01302
MLOC_30707.1	1210	0.0	262 - 1210	100	949 / 949	CUST_8982_PI390587928	ABC01287 ABC01302
MLOC_30707.3	1157	0.0	769 - 1157	100	389 / 389	CUST_8982_PI390587928	ABC01287 ABC01302
MLOC_2927.2	570	0.0	41 - 570	95	501 / 530	None	ABC01302
MLOC_9250.1	1486	1e-128	812 - 1073	98	259 / 263	CUST_37287_PI390587928 CUST_38102_PI390587928 CUST_34958_PI390587928	ABC01285 ABC01302
MLOC_9250.2	1258	5e-128	812 - 1066	99	254 / 256	CUST_34958_PI390587928	ABC01285 ABC01302
MLOC_9250.3	722	6e-127	279 - 529	99	250 / 251	None	ABC01285 ABC01302
AK248898.1	1359	3e-85	313 - 496	98	180 / 184	None	ABC01285 ABC01291 ABC01302
MLOC_30707.5	478	5e-83	311 - 478	100	168 / 168	None	ABC01287 ABC01302
MLOC_40355.1	1037	9e-81	18 - 181	100	164 / 164	None	ABC01302 ABC02379
MLOC_40355.2	694	9e-81	18 - 181	100	164 / 164	None	ABC01302 ABC02379
MLOC_40355.3	1002	9e-81	18 - 181	100	164 / 164	None	ABC01302 ABC02379
AK248512.1	796	9e-66	203 - 372	94	159 / 170	CUST_41568_PI390587928	ABC01287 ABC01302
MLOC_35880.1	171	5e-78	1 - 171	98	167 / 171	None	ABC01285 ABC01302
MLOC_50491.2	533	7e-77	1 - 169	98	165 / 169	None	ABC01285 ABC01302
MLOC_50491.1	555	7e-77	1 - 169	98	165 / 169	None	ABC01285 ABC01302
MLOC_24260.1	241	2e-72	1 - 170	96	163 / 170	None	ABC01287 ABC01302
MLOC_20414.1	189	2e-67	10 - 179	94	160 / 170	None	ABC01287 ABC01302
MLOC_22001.1	1497	7e-67	1350 - 1497	98	145 / 148	None	ABC01285 ABC01291 ABC01302
MLOC_780.1	324	9e-61	1 - 134	99	133 / 135	None	ABC01302