- Probe CUST_8982_PI390587928
- Source Contig U35_14448
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8982_PI390587928 | Hv_44K_v2 | GTTTTTGTTGTTCTGCTGCACGCTGTTAGCAATGTGAACTCCATTATTGCACCCGCTTTG | 501 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.604 | 0.608 | 1.153 | 1.371 | 0.954 | 1.055 |
| Raw | 96.948 | 120.474 | 253.502 | 442.155 | 118.116 | 142.085 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358922 | 2032 | 2e-24 | 1124 - 1183 | 100 | 60 / 60 | plus | ABC01285 ABC01287 ABC01302 ABC02379 |
| MLOC | AK354728 | 2811 | 2e-24 | 1103 - 1162 | 100 | 60 / 60 | plus | ABC01285 ABC01287 ABC01302 ABC02379 |
| MLOC | MLOC_30707.3 | 1157 | 2e-24 | 780 - 839 | 100 | 60 / 60 | minus | ABC01287 ABC01302 |
| MLOC | MLOC_30707.1 | 1210 | 2e-24 | 838 - 897 | 100 | 60 / 60 | minus | ABC01287 ABC01302 |
| MLOC | MLOC_30707.4 | 1000 | 2e-24 | 623 - 682 | 100 | 60 / 60 | minus | ABC01287 ABC01302 |
| MLOC | MLOC_30707.2 | 1076 | 2e-24 | 704 - 763 | 100 | 60 / 60 | minus | ABC01287 ABC01302 |
| JLOC1 | JLOC1_20278.2 | 1077 | 8e-25 | 319 - 378 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_20278.1 | 1070 | 8e-25 | 316 - 375 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01302 | 1394 | 3e-25 | 502 - 561 | 100 | 60 / 60 | plus | ABC01302 |
| Harvest21 | ABC01301 | 668 | 3e-25 | 563 - 622 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14448 | 618 | 3e-25 | 502 - 561 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14447 | 670 | 3e-25 | 563 - 622 | 100 | 60 / 60 | plus |
Contig Sequence (618 bp)
>U35_14448 618 Hv_44K_v2 ATTTTGAGCGAATCATATCTTAACATGCTTTAAATCTGTGTCATGGTTCTTTGTGATTTG ATATGACTGCTTGTTATGTTTTGTGGCCTTAACTCTACGCTCCTGTTACATTAGCAATAC TGTCATCAGCTTTCACATTAACTACCTTCTTAGCATGATAACTTATTATGTGTACCAAAC AAGTGATAGTGTAGCTTCTGAATTATCCTGTTTTGGCACGATATGTTATTGTGCCATGCT GGTTTCTGCATTGCATTTCTTTTAATATACCCTACCATTGATCTGTTTTTTCATCACCTA TTATTTCCTTAATAATACACCGAATTGCTGAAGACTACCATAAAACGAGCAGCTGATGAT CATTTAGTGGACGTTTTGTTAACTGCATACTAAACCTGATGTTTAACTAAATAGTAAATA TTCCGGTGATTACTATTGTAGGTGGCACTTAACTGTATATTCCCATTTGCATCTACAGTT TAGTTCTTCTAATATTCACATGTTTTTGTTGTTCTGCTGCACGCTGTTAGCAATGTGAAC TCCATTATTGCACCCGCTTTGATCGGCAAGGTCCCTACCGCTCAAACTGATCTCGACAAC TTTATGGTTCAGCAGCTT
Homology of Contig U35_14448 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |