barSeed - Barley Seed Development Database

Probe ABC01287

Source Contig ABC01287

barSeed

Links

Affymetrix Source Sequence (885 bp)

>ABC01287 885
GGGAAACCCTCGCCGCCGCCTCGTCCTCCCTCTTCTTCTATTCCTCTTCGGCGGCGGCTT
CAGACAGACCTCGCTAGCTAGGGTTTCGGGCGGCGGAAGGAAGATGAGCCGCAGCCTGGG
GATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGAC
CGGCGAGGTCTACCGGGGCTCCATGATCGAGTGCGAGGACAACTGGAACTGCCAGATCGA
GAACATCACATTCACAGCAAAGGACGGCAAGGTGTCGCAGCTGGAGCACGTCTTCATCAG
GGGCAGCAGGGTCAGGTTCATGATCATCCCCGACATGCTCAAGAACGCCCCCATGTTCAA
GCGCCTAGAGGCCAGGATAAGGGGCAAGGGGTCGGCCATCGGCGTCGGGCGCGGCCGCGC
TGTTGCCATGCGTGCCCGGGCTGCTGGTGGACGTGGTGGTGGTCCCCCTGTTGGAGGAGG
ACGGGGTGGCGCGCCTCCCGTGAGGAGGTAGATGATGTGAGCCGATCCACTGTGTGGTTG
AGGAAGGAAGTTGCTGTCTTTACTAGCGAAGTGAAACAAACTGCTGCGGCGGCCATGCTT
GTGAGCTTTGTGATGTGCCTCTAGTTTAGTTTGTTGGTTTCTGCGAACCGATTTTCTCTA
TGTATGATGATGATGTATTGCTGTTGTTAGGTGTAAACATGAGACTTGATGGTTCGTTGG
AGGCTGTGTCATTGCAATGGATTATCTCTTGTGAAGCTTACTGCTAGTTAATATGTGTTG
AACTATGACCATGATATAATCAAGTAGACCGTATCATCCCTGGTTTGTACGGCTGATGAC
ACTTATTCCATTGCACATCATCATCGTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248512.1	796	3e-73	584 - 777	92	182 / 197	CUST_41568_PI390587928	ABC01287 ABC01302
MLOC_34901.1	695	0.0	174 - 604	100	431 / 431	CUST_25110_PI390587928	ABC01287
MLOC_30707.5	478	1e-137	148 - 478	93	317 / 340	None	ABC01287 ABC01302
MLOC_24260.1	241	2e-105	1 - 241	95	230 / 241	None	ABC01287 ABC01302
AK358922	2032	1e-67	1587 - 1756	94	160 / 170	CUST_8982_PI390587928	ABC01285 ABC01287 ABC01302 ABC02379
AK354728	2811	1e-67	1566 - 1735	94	160 / 170	CUST_8982_PI390587928 CUST_37287_PI390587928 CUST_38102_PI390587928	ABC01285 ABC01287 ABC01302 ABC02379
MLOC_30707.3	1157	1e-67	124 - 293	94	160 / 170	CUST_8982_PI390587928	ABC01287 ABC01302
MLOC_30707.1	1210	1e-67	265 - 434	94	160 / 170	CUST_8982_PI390587928	ABC01287 ABC01302
MLOC_30707.4	1000	1e-67	50 - 219	94	160 / 170	CUST_8982_PI390587928	ABC01287 ABC01302
MLOC_30707.2	1076	1e-67	131 - 300	94	160 / 170	CUST_8982_PI390587928	ABC01287 ABC01302
MLOC_20414.1	189	7e-90	4 - 183	100	180 / 180	None	ABC01287 ABC01302
MLOC_34901.2	175	2e-81	1 - 165	100	165 / 165	None	ABC01287