barSeed - Barley Seed Development Database

Probe ABC01206

Source Contig ABC01206

barSeed

Links

Affymetrix Source Sequence (2566 bp)

>ABC01206 2566
ACTATATAACCTTCCCCACCGCGCCCGCCTTCTCCATCCTCGCGACGCAGAGCCCGAGAA
CCCCGCTCCAAAGCCCTAACCCTAGGCCATCCCCTCTCCCTCCCCTCAACCCTCGTCGAC
TCCGCGCGCGCCTGCGTTCCAGGAGCTTCCGCTGCCGGCGGCGCCATGGCCTCAGAGACC
GAGACCTTCGCCTTCCAGGCGGAGATCAACCAGCTGCTCTCGCTCATCATCAACACCTTC
TACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACGCCTCCGATGCGTTGGAT
AAGATCAGGTTTGAGAGCCTCACTGACAAGAGCAAGCTGGATGCTCAGCCAGAGCTGTTC
ATCCACATTATCCCTGACAAGGCCACCAACACACTCACCCTTATCGACAGTGGCATTGGT
ATGACCAAGTCAGACCTCGTGAACAACCTTGGTACCATTGCAAGGTCTGGCACCAAGGAT
TTCATGGAGGCATTGGCTGCTGGTGCCGATGTGTCCATGATTGGTCAGTTTGGTGTTGGT
TTCTACTCTGCTTACCTTGTTGCTGAGAGAGTCGTTGTGACCAGCAAGCACAACGATGAC
GAGCAGTATGTGTGGGAGTCCCAGGCTGGTGGCTCCTTCACTGTGACACGTGATACTACT
GGAGAGCCCCTTGGAAGGGGTACTAAGATCACCCTCTACCTCAAGGACGATCAGTTGGAG
TACCTTGAGGAGCGTCGCCTTAAGGATCTGGTGAAGAAGCACTCCGAGTTCATCAGCTAT
CCCATCTCCCTCTGGACGGAGAAGACCACTGAAAAGGAAATTTCTGACGATGAAGATGAG
GATGAGAAGAAGGATACTGAGGAGGGCAAGGTTGAGGAAATTGATGAAGAGAAGGAAGAA
AAGGAGAAGAAAAAGAAGAAGATCAAGGAGGTTTCTCACGAGTGGAACCTGATCAACAAG
CAGAAGCCTATCTGGATGAGGAAGCCTGAGGAGATCACCAAGGATGAGTATGCTGCCTTC
TACAAGAGCCTGACAAACGACTGGGAGGAGCACCTTGCCGTCAAGCACTTCTCTGTGGAG
GGTCAGCTTGAGTTCAAGGCCGTCCTCTTTGTTCCCAAGAGGGCCCCCTTTGACCTCTTT
GACACGAGGAAGAAGCTCAACAATATCAAGCTCTACGTGCGCCGTGTCTTCATCATGGAT
AACTGTGAGGAGCTGATCCCAGAGTGGCTGAGCTTTGTCAAGGGCATTGTTGACTCTGAG
GATCTTCCCCTGAACATCTCCCGTGAGACACTCCAGCAGAACAAGATCCTCAAGGTGATC
CGCAAGAACCTTGTGAAGAAGTGCATCGAGCTCTTCTTCGAGATTGCCGAGAACAAGGAG
GACTACACCAAGTTCTATGAGGCTTTCTCCAAGAACCTCAAGCTCGGCGTCCACGAAGAC
TCCACCAACAGGACCAAGCTTGCGGAGCTCCTGAGGTACCACTCCACCAAGAGTGGTGAT
GAGCTTACCAGCCTCAAGGACTATGTGACGAGGATGAAGGAGGGCCAGAACGACATCTAC
TACATCACCGGTGAGAGCAAGAAGGCTGTGGAGAACTCTCCCTTCCTTGAGAAGCTGAAG
AAGAAGGGCTACGAGGTGCTGTACATGGTTGACGCCATTGATGAGTACTCCATTGGCCAG
CTCAAGGAGTTTGAGGGAAAGAAGCTGGTCTCTGCCACCAAGGAGGGCCTCAAGCTTGAC
GACAGCGAGGAAGAGAAGAAAAGGAAGGAGGAGCTCAAGGAGAAGTTTGAGGGGCTCTGC
AAGGTGATCAAGGATGTGCTGGGTGACAGGGTCGAGAAGGTTATTGTCTCTGACCGCGTC
GTTGACTCTCCATGCTGCCTCGTCACGGGCGAGTACGGCTGGACTGCCAACATGGAGAGG
ATCATGAAGGCCCAGGCCCTGAGGGACACGAGCATGGGCGGCTACATGTCGAGCAAGAAG
ACGATGGAGATCAACCCTGAGAACGCCATCATGGAGGAGCTGCGCAAGCGCGCCGACGCG
GACAAGAACGACAAGTCGGTCAAGGACCTGGTGATGCTGCTGTTCGAGACCTCGCTGCTC
ACCTCTGGCTTCAGCCTCGACGACCCCAACACCTTCGGCACCAGGATCCACCGCATGCTC
AAGCTGGGCCTGAGCATCGACGAGGATGACGAGCCTGCTGAGGCTGACACGGACATGCCG
CCGCTGGAGGAGGATGCCGGCGAGAGCAAGATGGAGGAGGTCGACTAGGCGTGTGCATTT
ATTAGCCTGCTAGCTCATCTTTTGGTTACTGTCGCGTGGTCGGTTTGTCTTTGTGGTTTA
CTGTGCCTAGCCTGCACTAATGGGGCTAGGGGATGCTGGTCTATGGAGTGCCCGGAACTG
CGTATCGTAATCGTTGCTTATATATATCATCTTAGTATCTACCAGCTTAATTGATTAAGC
TATTTCTGTTTAAAAAAAAAAAAAAAAAGCTGGTTTCTCTGTTCAGTTGTTTCTGGAGTT
TGGTAAGGACGAAGTCATTAAACTAATCTGAGAGATCCTCTCGTTG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK355136	2539	0.0	2 - 2533	99	2508 / 2543	CUST_14774_PI390587928 CUST_5419_PI390587928 CUST_30758_PI390587928	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213 ABC47677 ABC49921
MLOC_18664.1	2006	0.0	371 - 2006	98	1613 / 1647	CUST_14774_PI390587928 CUST_30761_PI390587928 CUST_30758_PI390587928	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213 ABC47677 ABC49921
AK252673.1	2403	0.0	89 - 2196	89	1876 / 2109	CUST_985_PI390587928 CUST_29529_PI390587928	ABC01203 ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921
MLOC_18664.2	1456	2e-75	1 - 212	92	195 / 212	CUST_14774_PI390587928	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213 ABC47677 ABC49921
MLOC_18664.3	1381	0.0	175 - 1381	100	1207 / 1207	CUST_14774_PI390587928	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213 ABC47677 ABC49921
MLOC_5618.2	2805	0.0	284 - 2387	82	1731 / 2106	CUST_30752_PI390587928 CUST_39445_PI390587928 CUST_30739_PI390587928	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213
MLOC_72488.4	1922	0.0	1 - 1332	90	1197 / 1332	CUST_985_PI390587928 CUST_30749_PI390587928 CUST_29529_PI390587928	ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921
MLOC_72488.3	1865	0.0	1 - 1129	90	1016 / 1129	CUST_985_PI390587928 CUST_30749_PI390587928 CUST_29529_PI390587928	ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921
MLOC_72488.1	1300	0.0	1 - 1069	90	961 / 1069	CUST_985_PI390587928 CUST_29529_PI390587928	ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921
MLOC_72488.2	1490	0.0	1 - 1062	90	954 / 1062	CUST_985_PI390587928 CUST_29529_PI390587928	ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921
MLOC_18665.2	588	0.0	1 - 534	100	534 / 534	None	ABC01206
MLOC_5618.1	2323	0.0	355 - 1355	84	841 / 1003	CUST_30752_PI390587928 CUST_39445_PI390587928 CUST_30739_PI390587928	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213
MLOC_18665.1	1597	1e-52	1 - 114	100	114 / 114	None	ABC01206
MLOC_72487.1	960	0.0	298 - 960	88	581 / 663	None	ABC01203 ABC01204 ABC01206
MLOC_10369.1	1084	5e-150	100 - 391	99	291 / 292	None	ABC01206
MLOC_10369.2	318	4e-121	1 - 237	100	237 / 237	None	ABC01206