- Probe CUST_985_PI390587928
- Source Contig U35_29800
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_985_PI390587928 | Hv_44K_v2 | AAGAAGAAGGGCTATGAGGTCATCTACATGGTTGACGCCATTGATGAGTATGCCATTGGT | 373 | GeneList: darkorange2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.213 | 1.021 | 1.555 | 1.155 | 0.482 | 0.363 |
| Raw | 10398.833 | 12744.010 | 18128.967 | 21297.307 | 3123.237 | 2602.403 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252673.1 | 2403 | 2e-24 | 1543 - 1602 | 100 | 60 / 60 | plus | ABC01203 ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921 |
| MLOC | MLOC_72488.3 | 1865 | 2e-24 | 679 - 738 | 100 | 60 / 60 | plus | ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921 |
| MLOC | MLOC_72488.2 | 1490 | 2e-24 | 679 - 738 | 100 | 60 / 60 | plus | ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921 |
| MLOC | MLOC_72488.1 | 1300 | 2e-24 | 679 - 738 | 100 | 60 / 60 | plus | ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921 |
| MLOC | MLOC_72488.4 | 1922 | 2e-24 | 679 - 738 | 100 | 60 / 60 | plus | ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921 |
| JLOC1 | JLOC1_48211.1 | 1644 | 8e-25 | 821 - 880 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_48210.1 | 2835 | 8e-25 | 1681 - 1740 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29272 | 470 | 3e-25 | 374 - 433 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01211 | 950 | 3e-25 | 65 - 124 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01204 | 2561 | 3e-25 | 1527 - 1586 | 100 | 60 / 60 | plus | ABC01204 |
| Harvest35 | U35_29800 | 470 | 3e-25 | 374 - 433 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14129 | 2537 | 3e-25 | 1540 - 1599 | 100 | 60 / 60 | plus |
Contig Sequence (470 bp)
>U35_29800 470 Hv_44K_v2 GTTTGTTCCCAAGAGGGCCCCCTTCGACCTCTTCGACAACAAGAAGAAGGCCAACAACAT CAAGCTGTATGTGCGCCGTGTCTTCATCATGGACAACTGTGATGAGTTGATCCCTGAGTA CCTGAGCTTTGTCAAGGGCATTGTTGATTCAGAGGACCTTCCCCTGAACATCTCCCGTGA GACTCTCCAGCAGAACAAGATCCTCAAGGTCATCCGGAAGAACCTTGTCAAGAAGTGCAT TGAGCTCTTCTTTGAGATTGCTGAGAACAAGGAGGACTATGTAACCAGGATGAAGGAGGG TCAGAACGAGATCTACTACATCACTGGTGAGAGCAAGAAGGCTGTGGAGAACTCTCCCTT CCTTGAGAAGCTGAAGAAGAAGGGCTATGAGGTCATCTACATGGTTGACGCCATTGATGA GTATGCCATTGGTCAGCTCAAGGAGTTTGAGGGCAAGAAGCTTGTCTCTG
Homology of Contig U35_29800 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g39140.3 | 615 | 9e-89 | protein|heat shock protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g39590.1 | 701 | 1e-88 | |
| Arabidopsis v10 | AT5G56000.1 | 699 | 1e-88 | | Symbols: Hsp81.4, AtHsp90.4 | HEAT SHOCK PROTEIN 81.4 | chr5:22677602-22680067 REVERSE LENGTH=699 |