- Probe CUST_29529_PI390587928
- Source Contig U35_50110
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29529_PI390587928 | Hv_44K_v2 | TTTGAGATTGCTGAGAACAAGGAGGACTACAACAAGTTCTACGAGGCCTTCTCCAAGAAC | 467 | GeneList: ivory MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.113 | 0.983 | 2.289 | 1.497 | 0.617 | 0.455 |
| Raw | 1482.813 | 1901.133 | 4139.913 | 4277.797 | 627.270 | 508.139 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252673.1 | 2403 | 2e-24 | 1282 - 1341 | 100 | 60 / 60 | plus | ABC01203 ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921 |
| MLOC | MLOC_72488.3 | 1865 | 2e-24 | 418 - 477 | 100 | 60 / 60 | plus | ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921 |
| MLOC | MLOC_72488.2 | 1490 | 2e-24 | 418 - 477 | 100 | 60 / 60 | plus | ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921 |
| MLOC | MLOC_72488.1 | 1300 | 2e-24 | 418 - 477 | 100 | 60 / 60 | plus | ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921 |
| MLOC | MLOC_72488.4 | 1922 | 2e-24 | 418 - 477 | 100 | 60 / 60 | plus | ABC01204 ABC01206 ABC01207 ABC36777 ABC37233 ABC37920 ABC49921 |
| JLOC1 | JLOC1_48210.1 | 2835 | 8e-25 | 1420 - 1479 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52135 | 630 | 3e-25 | 468 - 527 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01204 | 2561 | 3e-25 | 1266 - 1325 | 100 | 60 / 60 | plus | ABC01204 |
| Harvest21 | ABC33023 | 187 | 1e-23 | 53 - 112 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_50110 | 630 | 3e-25 | 468 - 527 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14129 | 2537 | 3e-25 | 1279 - 1338 | 100 | 60 / 60 | plus |
Contig Sequence (630 bp)
>U35_50110 630 Hv_44K_v2 TAGCCGCCTCCCGCACGCTTCTCCTCCGCTCCGCTCCCCACCTCGAGCAGCTCAGGGACG CAGCCATGGCGACGGAGACCGAGACCTTCGCCTTCCAGGCCGAGATCAACAAGGAAGAGT ATGCTGCTTTCTACAAGAGCTTGACCAATGACTGGGAGGAGCATTTGGCTGTCAAGCACT TCTCTGTTGAGGGTCAGCTTGAGTTCAAGGCTGTCCTGTTTGTTCCCAAGAGGGCCCCCT TCGACCTCTTCGACAACAAGAAGAAGGCCAACAACATCAAGCTGTATGTGCGCCGTGTCT TCATCATGGACAACTGTGATGAGTTGATCCCTGAGTACCTGAGCTTTGTCAAGGGCATTG TTGATTCAGAGGACCTTCCCCTGAACATCTCCCGTGAGACTCTCCAGCAGAACAAGATCC TCAAGGTCATCCGGAAGAACCTTGTCAAGAAGTGCATTGAGCTCTTCTTTGAGATTGCTG AGAACAAGGAGGACTACAACAAGTTCTACGAGGCCTTCTCCAAGAACCTCAAGCTTGGCA TCCATGAGGACTCCCAGAACAGGACCAAGATTGCTGAGCTTCTGAGGTACCACTCCACCA AGAGTGGTGATGAGCTGACGAGCCTCAAGG
Homology of Contig U35_50110 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g39140.4 | 495 | 9e-112 | protein|heat shock protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g39590.1 | 701 | 2e-110 | |
| Arabidopsis v10 | AT5G56010.1 | 699 | 3e-112 | | Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 | heat shock protein 81-3 | chr5:22681410-22683911 FORWARD LENGTH=699 |