barSeed - Barley Seed Development Database

Probe ABC00824

Source Contig ABC00824

barSeed

Links

Affymetrix Source Sequence (1567 bp)

>ABC00824 1567
GGATCCAATTCGAAGACACACGAACATAGACGAACAACAACGACATCTGAGAAAATTCAC
CAAAGATAGATTCGCTGGAGACACACCTCCACACGTGCATCAACTATGCTAGCCGCATCG
CGAAACGGAGGCTAGACATAGAGACCTTTATTCTATCTTCAGTAAGCCGTTGTCGCAAAC
CCTAGCAAAACTAAAAATAACGATTAAAAACAGAGCCTCCTGCCAGCCCTTGCAAGATCC
ACCATGCCCCATGGTCCTAGGGCCATCGGAGTGGAGGCGGATCTGCGGCGGCGCTAGCAG
GAGGCAGAAACCCTAGCTTTTTTTGGAGGGAGGAGGAGGCGGCTGAAGGAGTCTCGTTTT
TAATCAGCCCCGACACCGCTAGCATGCTTGGTCGATCCATCGGCCGAACCAACATCCAAC
CATCTCCAAGATGCATTAATACCCATCTACATGTTCCAGCAACCAGCAACCGAAATTTAT
TATATTGGCTCACACCAATCGGATTTAACCCAATGGACGCAATACTTGGCACCATCGTAG
TTGGATCGCATGTTGCTAGCATCCCTATTTAAGCCCATACACCCCCTACGGAACTCCTCA
CCTGTTCGGTCACTTATTAGCAAATCTAGAGCTCACCACCACCACTATTGCAAACTCCTT
AGGGATGGCTCGCGCTGCAGCTACTCAGCTCGTGCTGGTCGCCATGGTGGCCGCCATGCT
CATCGTAGCTACCGACGCGGCCATCTCCTGCGGTCAGGTGAGCTCTGCCTTGAGCCCCTG
CATCTCCTATGCCCGCGGCAACGGCGCCAAACCGCCTGTGGCCTGCTGCAGCGGTGTCAA
GAGACTGGCCGGCGCAGCCCAGAGCACCGCTGACAAGCAAGCGGCGTGCAAGTGCATCAA
GAGCGCTGCGGGTGGGCTAAACGCTGGCAAGGCCGCCGGAATCCCCTCCATGTGCGGCGT
CAGCGTCCCCTACGCCATCAGTGCTTCCGTGGACTGCTCTAAGATTCGCTGATCAACCAC
TTGCTGCCTATAGCCCCAGCGATCGACGCTGAGTACGTTGAGGTCACACATACATACATA
TATATGAATAAATGCACAATATTATCTTCATGTGGGATATAGAGAGAGAGAGGAGTGCGT
ATGTTGAGCCAGTTCTGCATGGCCGGCCATACTGTACTATCGATGTTTGGTTGTTCCTTC
ACTCCCTTTGAGGGGACCTATGAGTTTATTGTACTTTGTAACATGTGCACTGTAGATATA
TGGATCATACACTCAGCTCTACCTCCTTTAAAAAAAACACTCAGCTATATGCCTGCGTGC
GTCGTTATTCAACTATTCCAATCCTGTTTATTGCTCCAATAAAACATATGAAAATGAACC
CAATTTACTGGGAACTGAACTATGACATTTCAGTCATTTTGGTTCCTCAACTAAACACAC
CCTAAAACTGTTTGACAACACACATAATTCTAGTGAATGCAATCACCAACAAAAACTCCT
ACTGGCTTTATTCTATGAAACGCTTAATAGTCGTCTGTTACTAAAAATGAACCCAGGCCA
TGGATCC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248902.1	701	0.0	2 - 683	99	680 / 682	None	ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC40733 ABC50827 ABC53018
MLOC_70373.1	758	0.0	164 - 758	99	594 / 595	CUST_13611_PI390587928	ABC00824 ABC00972 ABC40733
MLOC_71436.1	1029	0.0	87 - 1029	88	836 / 949	CUST_15913_PI390587928	ABC00717 ABC00824 ABC00845 ABC00871 ABC00959 ABC00972 ABC40733 ABC50827 ABC53018
MLOC_76238.1	554	0.0	1 - 554	99	550 / 555	None	ABC00824
MLOC_71436.2	732	0.0	62 - 706	92	600 / 654	CUST_15913_PI390587928	ABC00717 ABC00824 ABC00845 ABC00871 ABC00959 ABC00972 ABC40733 ABC50827 ABC53018
AK250295.1	855	0.0	214 - 835	93	577 / 622	None	ABC00717 ABC00824 ABC00845 ABC00871 ABC00959 ABC00972 ABC04890 ABC40733 ABC50827 ABC53018
MLOC_19141.1	1779	0.0	843 - 1766	83	790 / 949	CUST_15905_PI390587928	ABC00717 ABC00824 ABC00845 ABC00871 ABC00959 ABC00972 ABC50827 ABC53018
AK250392.1	734	0.0	51 - 734	87	599 / 686	CUST_3849_PI390587928 CUST_23534_PI390587928 CUST_2878_PI390587928	ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC34970 ABC49923 ABC50827 ABC53018
AK250027.1	697	2e-153	54 - 678	83	535 / 645	CUST_3648_PI390587928 CUST_15905_PI390587928	ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC50827 ABC53018
MLOC_79050.1	1147	6e-143	195 - 593	90	358 / 399	CUST_2878_PI390587928	ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC53018
MLOC_21527.1	911	3e-105	658 - 911	94	239 / 254	CUST_23534_PI390587928	ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC53018
MLOC_71435.1	338	5e-99	1 - 338	86	301 / 349	None	ABC00824
MLOC_81870.1	489	1e-75	1 - 449	79	371 / 469	CUST_3648_PI390587928 CUST_15905_PI390587928	ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC50827
MLOC_19141.2	627	1e-60	216 - 594	79	319 / 405	CUST_3648_PI390587928 CUST_15905_PI390587928	ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC50827 ABC53018